JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EXOSC7_chr3_44971244_45016471	0/0	c0007	876	1	0	1	0	0	0	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	c0008	596	1	0	0	1	0	0	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	c0009	876	1	0	0	0	0	1	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	c0010	876	1	0	0	0	0	1	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	c0011	876	1	0	0	0	0	1	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	c0012	876	1	0	0	1	0	0	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC8_chr13_36995786_37014614	1/1	c0001	831	202	82	42	48	9	19	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC8_chr13_36995786_37014614	0/0	c0002	831	177	8	33	113	3	20	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC8_chr13_36995786_37014614	0/0	c0003	831	4	0	0	4	0	0	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC8_chr13_36995786_37014614	0/0	c0004	831	3	0	3	0	0	0	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC8_chr13_36995786_37014614	0/0	c0005	831	2	0	0	0	2	0	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC8_chr13_36995786_37014614	0/0	c0006	831	1	0	0	1	0	0	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC8_chr13_36995786_37014614	0/0	c0007	831	1	0	0	0	0	1	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC9_chr4_121796323_121822021	1/1	c0001	1320	353	53	71	171	12	44	copy fasta	EXOSC9	chr4	121796323	121822021
EXOSC9_chr4_121796323_121822021	0/0	c0002	1320	32	24	7	1	0	0	copy fasta	EXOSC9	chr4	121796323	121822021
EXOSC9_chr4_121796323_121822021	0/0	c0003	1320	11	9	2	0	0	0	copy fasta	EXOSC9	chr4	121796323	121822021
EXOSC9_chr4_121796323_121822021	0/0	c0004	1320	2	2	0	0	0	0	copy fasta	EXOSC9	chr4	121796323	121822021
EXOSC9_chr4_121796323_121822021	0/0	c0005	1320	1	0	0	1	0	0	copy fasta	EXOSC9	chr4	121796323	121822021
EXOSC9_chr4_121796323_121822021	0/0	c0006	1320	1	0	0	1	0	0	copy fasta	EXOSC9	chr4	121796323	121822021
EXPH5_chr11_108500435_108598768	1/0	c0001	5970	61	14	16	16	1	13	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0002	5970	37	15	4	15	0	3	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/1	c0003	5970	36	6	15	6	4	4	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0004	5970	32	1	4	24	1	2	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0005	5970	26	1	4	15	1	5	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0006	5970	26	1	7	16	0	2	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0007	5970	13	10	1	1	0	1	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0008	5970	7	7	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0009	5970	7	6	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0010	5970	6	0	0	3	0	3	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0011	5970	6	2	0	2	0	2	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0012	5970	5	0	2	2	1	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0013	5970	4	3	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0014	5970	3	0	0	3	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0015	5970	3	3	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0016	5970	3	0	0	3	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0017	5970	3	0	2	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0018	5970	2	2	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0019	5970	2	1	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0020	5970	2	2	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0021	5970	2	0	1	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0022	5970	2	0	0	2	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0023	5970	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0024	5970	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0025	5970	1	0	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0026	5970	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0027	5970	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0028	5970	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0029	5970	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0030	5970	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0031	5970	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768