JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EXPH5_chr11_108500435_108598768	0/0	c0032	5970	1	0	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0033	5970	1	0	0	0	1	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0034	5970	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0035	5970	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0036	5970	1	0	0	0	1	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0037	5970	1	0	0	0	0	1	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0038	5970	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0039	5970	1	0	0	0	0	1	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0040	5970	1	0	0	0	0	1	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0041	5970	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0042	5970	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0043	5970	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0044	5970	1	0	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0045	5970	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0046	5970	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0047	5970	1	0	0	0	0	1	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	c0048	5970	1	0	0	0	0	1	copy fasta	EXPH5	chr11	108500435	108598768
EXT1_chr8_117789490_118116826	0/0	c0001	2241	113	43	10	41	2	17	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	c0002	2241	30	6	4	15	0	5	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	c0003	2241	13	6	2	1	2	2	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	c0004	2241	11	5	3	2	0	1	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	c0005	2241	10	2	0	6	1	1	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	c0006	2241	3	2	0	0	1	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	c0007	2241	3	3	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	c0008	2241	2	2	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	c0009	2241	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	c0010	2241	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	c0011	2241	1	0	0	1	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	c0012	2241	1	0	1	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	c0013	2241	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT2_chr11_44090678_44256962	1/1	c0001	2157	256	57	43	116	10	28	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	c0002	2157	44	0	1	41	0	2	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	c0003	2157	8	6	2	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	c0004	2157	6	3	0	2	0	1	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	c0005	2157	4	4	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	c0006	2157	4	4	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	c0007	2157	3	3	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	c0008	2157	2	0	0	2	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	c0009	2157	2	2	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	c0010	2157	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	c0011	2157	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	c0012	2157	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	c0013	2157	1	0	0	0	0	1	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	c0014	2157	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXTL1_chr1_26016775_26041464	0/1	c0001	2031	190	14	42	104	9	20	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	c0002	2031	67	15	16	28	1	7	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	1/0	c0003	2031	65	39	5	14	1	5	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	c0004	2031	17	16	1	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	c0005	2031	13	1	5	0	3	4	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	c0006	2031	11	9	2	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464