JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EXTL1_chr1_26016775_26041464	0/0	c0007	2031	2	1	0	1	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	c0008	2031	1	0	1	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	c0009	2031	1	1	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	c0010	2031	1	1	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	c0011	2031	1	1	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	c0012	2031	1	0	0	1	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	c0013	2031	1	0	0	0	0	1	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	c0014	2031	1	0	0	0	0	1	copy fasta	EXTL1	chr1	26016775	26041464
EXTL2_chr1_100867391_100899842	1/1	c0001	993	364	68	78	155	16	45	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	c0002	993	18	15	0	0	0	3	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	c0003	993	15	0	1	14	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	c0004	993	5	4	1	0	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	c0005	993	3	3	0	0	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	c0006	993	3	3	0	0	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	c0007	993	1	1	0	0	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	c0008	993	1	0	0	1	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL3_chr8_28696501_28760599	1/1	c0001	2760	256	58	53	117	10	16	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	c0002	2760	100	11	15	61	6	7	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	c0003	2760	10	10	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	c0004	2760	3	2	1	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	c0005	2760	2	0	0	1	0	1	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	c0006	2760	2	2	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	c0007	2760	2	0	0	2	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	c0008	2760	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	c0009	2760	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	c0010	2760	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	c0011	2760	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	c0012	2760	1	0	1	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EYA1_chr8_71192433_71367069	1/0	c0001	1779	76	31	15	13	4	12	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	c0002	1779	55	9	5	25	1	15	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/1	c0003	1779	34	16	5	7	3	2	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	c0004	1779	22	0	4	16	0	2	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	c0005	1779	14	0	4	9	0	1	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	c0006	1779	12	12	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	c0007	1779	8	1	0	7	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	c0008	1779	6	5	1	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	c0009	1779	1	0	1	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	c0010	1779	1	1	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	c0011	1779	1	0	1	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	c0012	1779	1	0	0	1	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	c0013	1779	1	1	0	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA2_chr20_46889843_47193844	1/1	c0001	1617	136	40	22	55	1	16	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	c0002	1617	42	20	2	16	0	4	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	c0003	1617	39	6	13	15	1	4	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	c0004	1617	8	1	1	6	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	c0005	1617	3	3	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	c0006	1617	2	2	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	c0007	1617	2	2	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	c0008	1617	1	1	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	c0009	1617	1	1	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844