Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADNP2_chr18_80104262_80145346	0/0	c0023	3396	1	0	1	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0024	3396	1	0	1	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP_chr20_50883918_50936437	1/1	c0001	3309	267	40	55	132	7	31	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0002	3309	38	15	7	14	1	1	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0003	3309	23	21	2	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0004	3309	15	7	5	1	0	2	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0005	3309	2	0	0	2	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0006	3309	2	2	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0007	3309	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0008	3309	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0009	3309	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0010	3309	1	1	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0011	3309	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0012	3309	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0013	3309	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0014	3309	1	1	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0015	3309	1	0	1	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0016	3309	1	1	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	c0017	3309	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADORA1_chr1_203122726_203172405	1/1	c0001	981	329	86	58	146	9	28	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	c0002	981	77	10	17	31	5	14	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	c0003	981	1	0	0	1	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	c0004	981	1	0	1	0	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA2A_chr22_24422599_24447357	1/0	c0001	1239	228	64	30	98	12	23	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/1	c0002	1239	140	17	33	71	6	12	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	c0003	1239	9	8	1	0	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	c0004	1239	4	4	0	0	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	c0005	1239	1	1	0	0	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	c0006	1239	1	0	0	1	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	c0007	1239	1	0	0	1	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	c0008	1239	1	0	0	1	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	c0009	1239	1	0	0	0	0	1	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2B_chr17_15940130_15980746	1/1	c0001	999	309	73	60	125	14	35	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	c0002	996	16	4	4	4	0	4	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	c0003	999	10	10	0	0	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	c0004	999	3	3	0	0	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	c0005	999	2	2	0	0	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	c0006	999	1	1	0	0	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	c0007	996	1	1	0	0	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	c0008	999	1	0	0	0	0	1	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	c0009	999	1	1	0	0	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	c0010	999	1	1	0	0	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA2B_chr17_15940130_15980746	0/0	c0011	1076	1	0	0	1	0	0	copy fasta	ADORA2B	chr17	15940130	15980746
ADORA3_chr1_111494429_111508633	0/0	c0001	957	322	65	60	157	8	32	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	1/0	c0002	957	99	26	6	47	5	14	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	c0003	957	13	2	3	6	0	2	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/1	c0004	957	8	1	5	0	1	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	c0005	957	6	0	4	2	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	c0006	957	2	2	0	0	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	c0007	957	2	2	0	0	0	0	copy fasta	ADORA3	chr1	111494429	111508633