JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EYA2_chr20_46889843_47193844	0/0	c0010	1617	1	1	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	c0011	1617	1	1	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	c0012	1617	1	1	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	c0013	1617	1	1	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA3_chr1_27965344_28093610	1/1	c0001	1722	386	83	67	186	14	34	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	c0002	1722	2	2	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	c0003	1722	1	1	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	c0004	1722	1	0	1	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	c0005	1722	1	1	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	c0006	1722	1	1	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA4_chr6_133236357_133537128	1/1	c0001	1920	149	30	30	66	5	16	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	c0002	1920	110	47	12	36	1	14	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	c0003	1920	2	2	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	c0004	1920	2	2	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	c0005	1920	1	1	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYS_chr6_63714980_65712226	0/0	c0001	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0002	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0003	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0004	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0005	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0006	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0007	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0008	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0009	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0010	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0011	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0012	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0013	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0014	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0015	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0016	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0017	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0018	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0019	9435	1	0	1	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0020	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0021	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0022	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0023	9435	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	c0024	9435	1	0	1	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EZH1_chr17_42695275_42750040	1/1	c0001	2244	325	78	64	143	2	36	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	c0002	2244	5	5	0	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	c0003	2244	2	0	0	2	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	c0004	2244	1	0	0	1	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	c0005	2244	1	1	0	0	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH2_chr7_148802383_148889291	1/1	c0001	2256	337	86	65	145	12	27	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	0/0	c0002	2256	33	0	4	26	2	1	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	0/0	c0003	2256	3	3	0	0	0	0	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	0/0	c0004	2256	1	0	1	0	0	0	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	0/0	c0005	2256	1	1	0	0	0	0	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	0/0	c0006	2256	1	0	0	0	0	1	copy fasta	EZH2	chr7	148802383	148889291