JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EZH2_chr7_148802383_148889291	0/0	c0007	2256	1	1	0	0	0	0	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	0/0	c0008	2256	1	0	0	0	0	1	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	0/0	c0009	2256	1	1	0	0	0	0	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	0/0	c0010	2256	1	0	0	1	0	0	copy fasta	EZH2	chr7	148802383	148889291
EZHIP_chrX_51401948_51413843	1/1	c0001	1512	249	56	46	115	9	21	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	c0002	1512	29	13	4	8	2	2	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	c0003	1512	4	4	0	0	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	c0004	1512	2	0	0	2	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	c0005	1512	1	0	1	0	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	c0006	1513	1	0	0	1	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	c0007	1512	1	0	0	0	0	1	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	c0008	1512	1	1	0	0	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	c0009	1512	1	0	1	0	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	c0010	1512	1	1	0	0	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	c0011	1512	1	0	0	1	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	c0012	1512	1	1	0	0	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	c0013	1512	1	1	0	0	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	c0014	1512	1	0	0	1	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	c0015	1512	1	1	0	0	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZR_chr6_158760748_158824368	1/1	c0001	1761	293	87	57	92	14	41	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	c0002	1761	6	5	1	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	c0003	1761	4	4	0	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	c0004	1761	1	0	0	0	0	1	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	c0005	1761	1	1	0	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	c0006	1761	1	0	0	1	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	c0007	1761	1	0	0	1	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	c0008	1761	1	0	0	1	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	c0009	1761	1	0	0	0	0	1	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	c0010	1761	1	1	0	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	c0011	1761	1	0	0	1	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	c0012	1761	1	0	0	0	0	1	copy fasta	EZR	chr6	158760748	158824368
F10_chr13_113117799_113154529	0/1	c0001	1467	254	45	54	116	16	22	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	1/0	c0002	1467	122	21	21	64	1	14	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	c0003	1467	12	10	2	0	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	c0004	1467	8	7	1	0	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	c0005	1467	3	3	0	0	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	c0006	1467	3	0	2	0	1	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	c0007	1467	2	2	0	0	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	c0008	1467	1	1	0	0	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	c0009	1467	1	0	0	1	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	c0010	1467	1	0	1	0	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	c0011	1467	1	0	0	1	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	c0012	1467	1	0	0	1	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	c0013	1467	1	1	0	0	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	c0014	1467	1	0	0	1	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	c0015	1467	1	0	1	0	0	0	copy fasta	F10	chr13	113117799	113154529
F11R_chr1_160990211_161026152	1/1	c0001	900	387	65	70	186	18	46	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	c0002	900	2	2	0	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	c0003	900	1	0	0	1	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	c0004	900	1	0	0	1	0	0	copy fasta	F11R	chr1	160990211	161026152