JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
F11R_chr1_160990211_161026152	0/0	c0005	900	1	1	0	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11_chr4_186261189_186294681	1/0	c0001	1878	303	42	55	164	14	27	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/1	c0002	1878	42	4	10	15	2	10	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0003	1878	39	4	5	23	0	7	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0004	1878	23	11	11	1	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0005	1878	20	18	0	0	2	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0006	1878	9	9	0	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0007	1878	4	3	1	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0008	1878	2	1	1	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0009	1878	2	2	0	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0010	1878	1	0	0	0	0	1	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0011	1878	1	0	1	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0012	1878	1	0	1	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0013	1878	1	0	0	1	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0014	1878	1	0	1	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0015	1878	1	1	0	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0016	1878	1	0	0	1	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0017	1878	1	0	0	0	0	1	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0018	1878	1	0	0	1	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0019	1878	1	1	0	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0020	1878	1	1	0	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	c0021	1878	1	1	0	0	0	0	copy fasta	F11	chr4	186261189	186294681
F12_chr5_177397141_177414564	0/1	c0001	1848	392	82	69	179	16	45	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	1/0	c0002	1848	31	3	8	18	0	1	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	c0003	1848	10	0	0	10	0	0	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	c0004	1848	9	4	1	0	0	4	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	c0005	1848	5	5	0	0	0	0	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	c0006	1848	2	0	2	0	0	0	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	c0007	1848	1	1	0	0	0	0	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	c0008	1848	1	0	1	0	0	0	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	c0009	1848	1	1	0	0	0	0	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	c0010	1848	1	0	0	1	0	0	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	c0011	1848	1	0	1	0	0	0	copy fasta	F12	chr5	177397141	177414564
F13A1_chr6_6139084_6325662	1/0	c0001	2199	138	30	29	64	2	12	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0002	2199	46	9	4	26	0	7	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/1	c0003	2199	29	12	11	0	3	2	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0004	2199	16	9	4	0	1	2	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0005	2199	12	2	1	9	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0006	2199	5	3	2	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0007	2199	4	0	0	3	0	1	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0008	2199	4	0	3	0	0	1	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0009	2199	4	0	3	0	0	1	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0010	2199	4	0	1	0	1	2	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0011	2199	3	1	2	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0012	2199	3	0	0	3	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0013	2199	3	0	1	0	1	1	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0014	2199	3	1	2	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0015	2199	3	1	2	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0016	2199	2	2	0	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0017	2199	2	0	2	0	0	0	copy fasta	F13A1	chr6	6139084	6325662