JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
F13A1_chr6_6139084_6325662	0/0	c0018	2199	2	1	1	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0019	2199	1	0	1	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0020	2199	1	0	0	1	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0021	2199	1	1	0	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0022	2199	1	0	0	0	0	1	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0023	2199	1	0	1	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0024	2199	1	1	0	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0025	2199	1	1	0	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0026	2199	1	1	0	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	c0027	2199	1	1	0	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13B_chr1_197033741_197072260	0/0	c0001	1986	189	21	33	111	7	17	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0002	1986	71	12	15	28	3	13	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	1/1	c0003	1986	59	46	5	0	1	5	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0004	1986	6	0	0	6	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0005	1986	3	3	0	0	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0006	1986	3	3	0	0	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0007	1986	1	0	0	1	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0008	1986	1	0	0	0	1	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0009	1986	1	0	1	0	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0010	1986	1	0	0	1	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0011	1986	1	0	0	0	0	1	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0012	1986	1	0	0	1	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0013	1986	1	0	0	1	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0014	1986	1	1	0	0	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0015	1986	1	1	0	0	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0016	1986	1	1	0	0	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	c0017	1986	1	0	0	1	0	0	copy fasta	F13B	chr1	197033741	197072260
F2RL1_chr5_76814030_76840315	0/1	c0001	1194	319	83	75	101	15	44	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	c0002	1194	60	1	2	52	1	4	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	1/0	c0003	1194	28	0	0	26	0	1	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	c0004	1194	5	5	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	c0005	1194	3	1	2	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	c0006	1194	2	0	1	0	0	1	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	c0007	1194	1	1	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	c0008	1194	1	1	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	c0009	1194	1	0	0	1	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL2_chr5_76610482_76628403	1/1	c0001	1125	439	92	77	205	18	45	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	c0002	1125	30	4	3	22	0	1	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	c0003	1125	1	1	0	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	c0004	1125	1	0	0	1	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	c0005	1125	1	0	0	1	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	c0006	1125	1	0	0	1	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	c0007	1125	1	1	0	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL3_chr19_16883999_16897606	1/1	c0001	1158	243	23	54	123	16	25	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0002	1158	120	52	18	39	0	11	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0003	1158	10	9	1	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0004	1158	5	0	0	5	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0005	1158	4	4	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0006	1158	3	3	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0007	1158	3	0	0	3	0	0	copy fasta	F2RL3	chr19	16883999	16897606