JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
F2RL3_chr19_16883999_16897606	0/0	c0008	1158	1	1	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0009	1158	1	0	0	1	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0010	1158	1	0	0	0	0	1	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0011	1158	1	0	1	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0012	1158	1	0	0	0	0	1	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0013	1158	1	0	0	1	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0014	1158	1	0	0	1	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0015	1158	1	1	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0016	1158	1	0	1	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0017	1158	1	0	1	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0018	1158	1	0	0	1	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	c0019	1158	1	1	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2R_chr5_76711126_76740770	1/1	c0001	1278	420	90	82	182	16	48	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	c0002	1278	1	1	0	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	c0003	1278	1	1	0	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2_chr11_46714213_46744506	1/0	c0001	1869	227	72	38	80	10	26	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/1	c0002	1869	82	1	14	60	1	5	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/0	c0003	1869	20	19	1	0	0	0	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/0	c0004	1869	12	0	6	0	1	5	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/0	c0005	1869	2	2	0	0	0	0	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/0	c0006	1869	1	0	0	1	0	0	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/0	c0007	1869	1	0	1	0	0	0	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/0	c0008	1869	1	0	1	0	0	0	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/0	c0009	1869	1	0	0	1	0	0	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/0	c0010	1869	1	0	1	0	0	0	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/0	c0011	1869	1	0	0	1	0	0	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/0	c0012	1869	1	0	0	1	0	0	copy fasta	F2	chr11	46714213	46744506
F3_chr1_94524173_94546759	1/1	c0001	888	442	84	77	218	16	45	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	c0002	888	5	3	0	1	0	1	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	c0003	888	4	3	1	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	c0004	888	3	3	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	c0005	888	2	0	0	2	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	c0006	888	2	2	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	c0007	888	2	2	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	c0008	888	1	1	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	c0009	888	1	0	0	1	0	0	copy fasta	F3	chr1	94524173	94546759
F5_chr1_169506951_169591481	0/0	c0001	6675	25	0	0	25	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0002	6675	25	0	3	18	0	4	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0003	6675	19	4	8	1	3	3	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0004	6675	12	0	1	10	0	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0005	6675	12	0	3	7	0	2	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0006	6675	10	2	1	6	0	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0007	6675	10	3	2	0	4	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0008	6675	10	0	6	3	0	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0009	6675	9	0	6	3	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0010	6675	9	1	5	2	0	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0011	6675	8	0	3	3	1	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0012	6675	7	5	2	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0013	6675	6	6	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0014	6675	6	0	0	6	0	0	copy fasta	F5	chr1	169506951	169591481