JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
F5_chr1_169506951_169591481	0/0	c0065	6675	1	0	1	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0066	6675	1	0	1	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0067	6675	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0068	6675	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0069	6675	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0070	6675	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0071	6675	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0072	6675	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0073	6675	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0074	6675	1	0	0	1	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0075	6675	1	0	0	0	0	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0076	6675	1	0	0	0	0	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0077	6675	1	0	0	0	1	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0078	6675	1	0	0	0	0	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0079	6675	1	0	1	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0080	6675	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	c0081	6675	1	0	0	1	0	0	copy fasta	F5	chr1	169506951	169591481
F7_chr13_113100791_113125685	1/1	c0001	1335	351	66	70	165	16	32	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	c0002	1335	35	12	3	6	0	14	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	c0003	1335	6	4	0	0	2	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	c0004	1335	1	0	1	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	c0005	1335	1	1	0	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	c0006	1335	1	1	0	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	c0007	1335	1	0	0	1	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	c0008	1324	1	0	1	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	c0009	1335	1	0	0	1	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	c0010	1335	1	0	1	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	c0011	1335	1	0	0	1	0	0	copy fasta	F7	chr13	113100791	113125685
F8A1_chrX_154881355_154893061	0/0	c0001	1116	299	61	56	142	11	29	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	c0002	1116	20	19	1	0	0	0	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	c0003	1115	1	0	0	1	0	0	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	c0004	1116	1	0	1	0	0	0	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	c0005	1116	1	0	0	0	0	1	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	c0006	1122	1	0	0	1	0	0	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	c0007	1053	1	0	0	1	0	0	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	c0008	1116	1	0	0	1	0	0	copy fasta	F8A1	chrX	154881355	154893061
F8A2_chrX_155377095_155388801	0/0	c0001	1116	251	69	49	95	11	27	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	c0002	1116	3	0	3	0	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	c0003	1117	2	0	0	2	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	c0004	1125	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	c0005	1117	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	c0006	1118	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	c0007	1117	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	c0008	1116	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	c0009	1116	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	c0010	1116	1	1	0	0	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	c0011	1116	1	1	0	0	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	c0012	1123	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	c0013	1128	1	0	1	0	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	c0014	1120	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801