JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
F8A3_chrX_155451914_155463620	0/0	c0001	1116	249	55	44	110	9	31	copy fasta	F8A3	chrX	155451914	155463620
F8A3_chrX_155451914_155463620	0/0	c0002	1116	10	0	8	1	1	0	copy fasta	F8A3	chrX	155451914	155463620
F8A3_chrX_155451914_155463620	0/0	c0003	1116	8	8	0	0	0	0	copy fasta	F8A3	chrX	155451914	155463620
F8A3_chrX_155451914_155463620	0/0	c0004	1059	1	0	0	1	0	0	copy fasta	F8A3	chrX	155451914	155463620
F8A3_chrX_155451914_155463620	0/0	c0005	1116	1	0	0	1	0	0	copy fasta	F8A3	chrX	155451914	155463620
F8A3_chrX_155451914_155463620	0/0	c0006	1116	1	1	0	0	0	0	copy fasta	F8A3	chrX	155451914	155463620
F8_chrX_154830792_155027723	1/1	c0001	7056	120	10	23	67	4	14	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0002	7056	46	27	7	6	4	2	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0003	7056	36	3	11	10	1	11	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0004	7056	14	14	0	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0005	7056	4	3	1	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0006	7056	2	2	0	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0007	7056	2	2	0	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0008	7056	1	0	1	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0009	7056	1	0	0	0	0	1	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0010	7056	1	1	0	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0011	7056	1	1	0	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0012	7056	1	0	0	1	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0013	7057	1	0	0	1	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0014	7056	1	0	1	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0015	7057	1	0	0	1	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	c0016	7056	1	1	0	0	0	0	copy fasta	F8	chrX	154830792	155027723
F9_chrX_139525739_139568459	1/0	c0001	1386	223	60	37	98	8	19	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/1	c0002	1386	25	8	5	0	3	8	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	c0003	1386	3	2	1	0	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	c0004	1386	2	2	0	0	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	c0005	1386	2	1	1	0	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	c0006	1386	2	2	0	0	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	c0007	1386	1	0	0	1	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	c0008	1386	1	1	0	0	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	c0009	1386	1	0	0	1	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	c0010	1386	1	1	0	0	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	c0011	1386	1	1	0	0	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	c0012	1386	1	0	0	0	0	1	copy fasta	F9	chrX	139525739	139568459
FA2H_chr16_74707969_74779820	0/1	c0001	1119	203	27	39	99	8	29	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	1/0	c0002	1119	75	6	12	46	2	8	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0003	1119	44	26	5	4	4	5	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0004	1119	16	10	3	2	0	1	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0005	1119	14	9	0	5	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0006	1119	9	2	5	0	1	1	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0007	1119	6	0	0	6	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0008	1119	5	3	1	1	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0009	1119	3	3	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0010	1119	2	0	0	0	0	2	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0011	1119	1	0	1	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0012	1119	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0013	1119	1	0	0	1	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0014	1119	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0015	1119	1	0	0	0	1	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0016	1119	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820