JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FA2H_chr16_74707969_74779820	0/0	c0017	1119	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0018	1119	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0019	1119	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0020	1119	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	c0021	1119	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FAAH2_chrX_57281706_57494193	0/1	c0001	1599	130	52	24	41	4	8	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	c0002	1599	123	1	24	75	7	16	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	c0003	1599	19	15	4	0	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	c0004	1599	2	0	0	2	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	c0005	1599	1	0	1	0	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	c0006	1599	1	1	0	0	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	c0007	1599	1	1	0	0	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	c0008	1599	1	0	0	1	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	c0009	1598	1	0	0	1	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	c0010	1599	1	0	0	1	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	1/0	c0011	1599	1	0	0	0	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	c0012	1599	1	0	0	1	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH_chr1_46389317_46418845	0/0	c0001	1740	218	40	34	111	9	24	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	0/0	c0002	1740	95	24	23	40	2	6	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	1/0	c0003	1740	38	17	4	0	3	13	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	0/0	c0004	1732	7	1	0	5	0	1	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	0/1	c0005	1740	6	0	1	0	2	2	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	0/0	c0006	1732	2	2	0	0	0	0	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	0/0	c0007	1740	2	2	0	0	0	0	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	0/0	c0008	1754	1	1	0	0	0	0	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	0/0	c0009	1740	1	1	0	0	0	0	copy fasta	FAAH	chr1	46389317	46418845
FAAP100_chr17_81534891_81557353	0/1	c0001	2646	203	33	34	94	8	33	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0002	2646	70	26	11	27	1	5	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0003	2646	51	5	3	40	0	3	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0004	2646	51	2	13	26	5	5	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	1/0	c0005	2646	15	3	6	1	2	2	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0006	2646	10	1	9	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0007	2646	5	4	1	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0008	2646	4	4	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0009	2646	4	1	3	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0010	2646	2	2	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0011	2646	2	0	0	0	0	2	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0012	2646	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0013	2646	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0014	2646	1	0	0	1	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0015	2646	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0016	2646	1	0	0	1	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0017	2646	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0018	2646	1	0	0	0	1	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0019	2646	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0020	2646	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0021	2646	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0022	2646	1	0	0	0	1	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0023	2646	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0024	2646	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353