JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAAP100_chr17_81534891_81557353	0/0	c0025	2646	1	0	0	1	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0026	2646	1	0	1	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0027	2646	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0028	2646	1	0	1	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0029	2646	1	0	0	1	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	c0030	2646	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP20_chr1_2184548_2199772	0/1	c0001	543	314	41	60	157	13	42	copy fasta	FAAP20	chr1	2184548	2199772
FAAP20_chr1_2184548_2199772	0/0	c0002	543	75	55	6	7	3	4	copy fasta	FAAP20	chr1	2184548	2199772
FAAP20_chr1_2184548_2199772	0/0	c0003	543	2	0	0	2	0	0	copy fasta	FAAP20	chr1	2184548	2199772
FAAP20_chr1_2184548_2199772	1/0	c0004	543	1	0	0	0	0	0	copy fasta	FAAP20	chr1	2184548	2199772
FAAP24_chr19_32967242_32983229	1/0	c0001	648	141	40	23	50	7	20	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/1	c0002	648	102	29	34	25	3	10	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	c0003	648	97	5	11	73	5	3	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	c0004	648	73	1	9	53	2	8	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	c0005	648	23	4	1	9	1	8	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	c0006	648	10	10	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	c0007	648	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	c0008	648	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	c0009	648	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	c0010	648	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	c0011	648	1	0	0	0	0	1	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	c0012	648	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FABP12_chr8_81519981_81538867	0/0	c0001	423	396	81	71	188	16	40	copy fasta	FABP12	chr8	81519981	81538867
FABP12_chr8_81519981_81538867	0/0	c0002	423	11	11	0	0	0	0	copy fasta	FABP12	chr8	81519981	81538867
FABP12_chr8_81519981_81538867	0/0	c0003	423	3	3	0	0	0	0	copy fasta	FABP12	chr8	81519981	81538867
FABP12_chr8_81519981_81538867	0/0	c0004	423	2	0	0	2	0	0	copy fasta	FABP12	chr8	81519981	81538867
FABP12_chr8_81519981_81538867	0/0	c0005	423	1	1	0	0	0	0	copy fasta	FABP12	chr8	81519981	81538867
FABP12_chr8_81519981_81538867	0/0	c0006	423	1	0	1	0	0	0	copy fasta	FABP12	chr8	81519981	81538867
FABP1_chr2_88117982_88133062	1/0	c0001	384	366	85	55	168	11	46	copy fasta	FABP1	chr2	88117982	88133062
FABP1_chr2_88117982_88133062	0/1	c0002	384	101	15	27	49	5	4	copy fasta	FABP1	chr2	88117982	88133062
FABP1_chr2_88117982_88133062	0/0	c0003	384	1	0	0	1	0	0	copy fasta	FABP1	chr2	88117982	88133062
FABP2_chr4_119312250_119327138	0/0	c0001	399	148	42	34	60	4	8	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	1/0	c0002	399	107	15	15	55	6	15	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	c0003	399	98	14	24	49	1	10	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/1	c0004	399	67	23	5	24	7	7	copy fasta	FABP2	chr4	119312250	119327138
FABP3_chr1_31360253_31378076	1/1	c0001	402	382	86	66	174	12	42	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/0	c0002	402	2	2	0	0	0	0	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/0	c0003	402	2	0	0	0	2	0	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/0	c0004	402	1	0	0	1	0	0	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/0	c0005	402	1	0	0	1	0	0	copy fasta	FABP3	chr1	31360253	31378076
FABP4_chr8_81473419_81488233	1/1	c0001	399	403	94	77	176	14	40	copy fasta	FABP4	chr8	81473419	81488233
FABP4_chr8_81473419_81488233	0/0	c0002	399	2	0	2	0	0	0	copy fasta	FABP4	chr8	81473419	81488233
FABP4_chr8_81473419_81488233	0/0	c0003	399	1	0	1	0	0	0	copy fasta	FABP4	chr8	81473419	81488233
FABP5_chr8_81275536_81289775	0/0	c0001	408	264	90	50	100	6	18	copy fasta	FABP5	chr8	81275536	81289775
FABP6_chr5_160224506_160243716	1/0	c0001	387	276	46	50	147	10	22	copy fasta	FABP6	chr5	160224506	160243716
FABP6_chr5_160224506_160243716	0/1	c0002	387	186	47	25	84	7	22	copy fasta	FABP6	chr5	160224506	160243716
FABP6_chr5_160224506_160243716	0/0	c0003	387	7	5	2	0	0	0	copy fasta	FABP6	chr5	160224506	160243716
FABP6_chr5_160224506_160243716	0/0	c0004	387	6	0	3	0	1	2	copy fasta	FABP6	chr5	160224506	160243716
FABP6_chr5_160224506_160243716	0/0	c0005	387	1	0	0	1	0	0	copy fasta	FABP6	chr5	160224506	160243716
FABP7_chr6_122774716_122789074	1/1	c0001	399	469	96	82	225	18	46	copy fasta	FABP7	chr6	122774716	122789074