Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADORA3_chr1_111494429_111508633	0/0	c0008	957	1	0	0	1	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	c0009	957	1	0	0	1	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	c0010	957	1	0	0	1	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	c0011	957	1	0	0	1	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	c0012	957	1	0	0	1	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADORA3_chr1_111494429_111508633	0/0	c0013	957	1	0	0	1	0	0	copy fasta	ADORA3	chr1	111494429	111508633
ADO_chr10_62799720_62813479	1/0	c0001	813	286	84	43	125	7	26	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/1	c0002	813	75	4	16	38	4	12	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	c0003	813	46	0	4	40	0	2	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	c0004	813	12	2	5	0	1	4	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	c0005	813	4	4	0	0	0	0	copy fasta	ADO	chr10	62799720	62813479
ADO_chr10_62799720_62813479	0/0	c0006	813	3	0	0	3	0	0	copy fasta	ADO	chr10	62799720	62813479
ADPGK_chr15_72746294_72788758	0/1	c0001	1494	233	41	33	124	10	24	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	c0002	1494	91	28	17	43	2	1	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	c0003	1494	21	7	8	0	2	4	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	1/0	c0004	1494	13	11	1	0	0	0	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	c0005	1494	3	0	3	0	0	0	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	c0006	1494	3	3	0	0	0	0	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	c0007	1494	2	0	0	2	0	0	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	c0008	1494	1	1	0	0	0	0	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	c0009	1494	1	1	0	0	0	0	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	c0010	1494	1	0	0	1	0	0	copy fasta	ADPGK	chr15	72746294	72788758
ADPGK_chr15_72746294_72788758	0/0	c0011	1494	1	0	0	0	0	1	copy fasta	ADPGK	chr15	72746294	72788758
ADPRHL1_chr13_113394611_113458488	1/1	c0001	5904	85	7	23	38	0	15	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0002	6135	48	17	12	8	4	7	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0003	6135	17	9	6	0	1	1	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0004	5904	12	0	1	8	0	3	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0005	6135	10	9	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0006	5868	5	0	0	5	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0007	6135	5	5	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0008	6135	4	4	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0009	6135	4	0	3	0	1	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0010	6135	3	0	2	0	1	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0011	6027	3	2	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0012	6135	3	0	3	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0013	5835	3	3	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0014	6135	2	1	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0015	6135	2	0	0	0	1	1	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0016	5835	2	0	0	0	0	2	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0017	5868	2	0	0	2	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0018	6135	2	1	0	0	1	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0019	6135	2	2	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0020	6135	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0021	6027	1	0	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0022	5904	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0023	6135	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0024	6135	1	0	0	0	0	1	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0025	5904	1	0	0	0	1	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0026	6027	1	0	0	1	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	c0027	5904	1	0	0	1	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488