JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FABP7_chr6_122774716_122789074	0/0	c0002	399	7	0	0	7	0	0	copy fasta	FABP7	chr6	122774716	122789074
FABP7_chr6_122774716_122789074	0/0	c0003	399	2	0	0	0	0	2	copy fasta	FABP7	chr6	122774716	122789074
FABP7_chr6_122774716_122789074	0/0	c0004	399	1	1	0	0	0	0	copy fasta	FABP7	chr6	122774716	122789074
FABP7_chr6_122774716_122789074	0/0	c0005	399	1	1	0	0	0	0	copy fasta	FABP7	chr6	122774716	122789074
FABP9_chr8_81453253_81466579	1/0	c0001	399	394	68	77	197	10	41	copy fasta	FABP9	chr8	81453253	81466579
FABP9_chr8_81453253_81466579	0/0	c0002	399	12	9	3	0	0	0	copy fasta	FABP9	chr8	81453253	81466579
FABP9_chr8_81453253_81466579	0/0	c0003	399	8	6	2	0	0	0	copy fasta	FABP9	chr8	81453253	81466579
FABP9_chr8_81453253_81466579	0/0	c0004	399	7	7	0	0	0	0	copy fasta	FABP9	chr8	81453253	81466579
FABP9_chr8_81453253_81466579	0/0	c0005	399	6	6	0	0	0	0	copy fasta	FABP9	chr8	81453253	81466579
FABP9_chr8_81453253_81466579	0/0	c0006	399	1	0	0	1	0	0	copy fasta	FABP9	chr8	81453253	81466579
FABP9_chr8_81453253_81466579	0/1	c0007	399	1	0	0	0	0	0	copy fasta	FABP9	chr8	81453253	81466579
FABP9_chr8_81453253_81466579	0/0	c0008	399	1	0	0	0	0	1	copy fasta	FABP9	chr8	81453253	81466579
FADD_chr11_70198296_70212390	1/1	c0001	627	408	98	82	162	18	46	copy fasta	FADD	chr11	70198296	70212390
FADS1_chr11_61794627_61822003	1/1	c0001	1506	270	62	56	113	13	24	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	c0002	1518	1	0	0	1	0	0	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	c0003	1506	1	0	0	0	1	0	copy fasta	FADS1	chr11	61794627	61822003
FADS2_chr11_61823300_61872354	1/1	c0001	1335	276	81	54	105	12	22	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	c0002	1335	1	0	0	1	0	0	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	c0003	1335	1	1	0	0	0	0	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	c0004	1335	1	1	0	0	0	0	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	c0005	1335	1	1	0	0	0	0	copy fasta	FADS2	chr11	61823300	61872354
FADS3_chr11_61868526_61896545	1/0	c0001	1338	229	89	44	71	7	17	copy fasta	FADS3	chr11	61868526	61896545
FADS3_chr11_61868526_61896545	0/1	c0002	1338	181	7	25	115	7	26	copy fasta	FADS3	chr11	61868526	61896545
FADS3_chr11_61868526_61896545	0/0	c0003	1338	3	2	1	0	0	0	copy fasta	FADS3	chr11	61868526	61896545
FADS3_chr11_61868526_61896545	0/0	c0004	1338	1	0	0	1	0	0	copy fasta	FADS3	chr11	61868526	61896545
FADS3_chr11_61868526_61896545	0/0	c0005	1338	1	1	0	0	0	0	copy fasta	FADS3	chr11	61868526	61896545
FADS3_chr11_61868526_61896545	0/0	c0006	1338	1	0	0	1	0	0	copy fasta	FADS3	chr11	61868526	61896545
FADS3_chr11_61868526_61896545	0/0	c0007	1338	1	0	0	0	0	1	copy fasta	FADS3	chr11	61868526	61896545
FADS3_chr11_61868526_61896545	0/0	c0008	1338	1	1	0	0	0	0	copy fasta	FADS3	chr11	61868526	61896545
FADS6_chr17_74872302_74898633	1/1	c0001	1107	232	29	38	117	12	34	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0002	1125	101	17	23	48	5	8	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0003	1053	29	10	7	8	0	4	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0004	1143	20	6	2	9	1	2	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0005	1053	16	14	0	2	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0006	1089	9	2	1	5	0	1	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0007	1107	5	0	2	3	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0008	1125	5	5	0	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0009	1143	4	3	1	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0010	1161	4	4	0	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0011	1107	3	3	0	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0012	1053	2	0	0	2	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0013	1125	2	0	0	2	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0014	1071	2	0	1	0	0	1	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0015	1053	1	0	0	1	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0016	1053	1	1	0	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0017	1053	1	1	0	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0018	1125	1	1	0	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0019	1126	1	0	0	1	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	c0020	1107	1	0	1	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FAF1_chr1_50432028_50965267	1/0	c0001	1953	177	81	30	48	8	9	copy fasta	FAF1	chr1	50432028	50965267