JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAF1_chr1_50432028_50965267	0/0	c0002	1953	11	2	4	0	0	5	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	c0003	1953	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/1	c0004	1953	1	0	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF2_chr5_176443385_176515074	1/1	c0001	1338	362	82	64	165	10	39	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	c0002	1338	3	0	0	3	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	c0003	1338	1	0	0	1	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	c0004	1338	1	1	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	c0005	1338	1	1	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	c0006	1338	1	1	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	c0007	1338	1	0	0	0	0	1	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	c0008	1338	1	1	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	c0009	1338	1	0	0	1	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAHD1_chr16_1822206_1833910	1/0	c0001	666	294	65	50	135	14	29	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/1	c0002	666	62	7	7	36	1	10	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	c0003	666	59	1	19	33	1	5	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	c0004	666	20	15	0	2	0	3	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	c0005	666	8	0	0	8	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	c0006	666	3	3	0	0	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	c0007	666	1	1	0	0	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	c0008	666	1	0	0	0	0	1	copy fasta	FAHD1	chr16	1822206	1833910
FAHD2A_chr2_95397708_95421616	1/1	c0001	945	331	65	60	155	12	37	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	c0002	945	15	0	6	9	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	c0003	945	3	0	0	3	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	c0004	945	2	2	0	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	c0005	945	1	1	0	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	c0006	945	1	0	0	0	0	1	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	c0007	945	1	0	0	1	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2B_chr2_97078583_97099882	1/1	c0001	945	372	83	62	175	15	35	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	c0002	945	14	5	6	0	2	1	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	c0003	945	12	11	0	1	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	c0004	945	6	0	4	0	0	2	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	c0005	945	3	0	0	3	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	c0006	945	1	0	0	0	0	1	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	c0007	945	1	0	0	1	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	c0008	945	1	0	0	1	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	c0009	945	1	0	0	0	1	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	c0010	945	1	0	0	1	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	c0011	945	1	0	0	0	0	1	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	c0012	945	1	1	0	0	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAH_chr15_80147999_80191349	1/1	c0001	1260	349	76	68	155	16	32	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0002	1260	24	2	3	15	0	4	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0003	1260	15	5	4	3	0	3	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0004	1260	11	0	0	11	0	0	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0005	1260	4	3	1	0	0	0	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0006	1260	4	0	0	0	0	4	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0007	1260	4	4	0	0	0	0	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0008	1260	3	1	0	2	0	0	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0009	1260	3	0	0	3	0	0	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0010	1260	2	0	1	0	0	1	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0011	1260	1	0	0	0	0	1	copy fasta	FAH	chr15	80147999	80191349