JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAH_chr15_80147999_80191349	0/0	c0012	1260	1	0	0	0	0	1	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0013	1260	1	1	0	0	0	0	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0014	1260	1	1	0	0	0	0	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0015	1260	1	0	1	0	0	0	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0016	1260	1	0	0	0	0	1	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0017	1260	1	0	0	0	0	1	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0018	1260	1	1	0	0	0	0	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	c0019	1260	1	0	0	1	0	0	copy fasta	FAH	chr15	80147999	80191349
FAIM2_chr12_49861896_49908900	1/1	c0001	951	422	85	66	205	18	46	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	c0002	951	10	9	1	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	c0003	951	2	2	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	c0004	918	1	0	1	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	c0005	951	1	0	0	1	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM_chr3_138603771_138638376	1/1	c0001	606	261	18	50	132	14	45	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	c0002	606	45	37	8	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	c0003	606	31	18	6	4	0	3	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	c0004	606	13	7	6	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	c0005	606	8	8	0	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	c0006	606	3	3	0	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	c0007	606	1	1	0	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	c0008	606	1	0	1	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	c0009	606	1	0	1	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	c0010	606	1	0	0	1	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	c0011	606	1	0	0	1	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	c0012	606	1	1	0	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	c0013	606	1	1	0	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAM104A_chr17_73202365_73237394	0/0	c0001	624	214	53	44	87	10	20	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	1/1	c0002	624	174	43	31	76	2	20	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	c0003	624	4	0	0	4	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	c0004	627	3	2	1	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	c0005	627	1	0	0	1	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	c0006	624	1	1	0	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	c0007	624	1	0	0	1	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	c0008	624	1	1	0	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	c0009	624	1	0	0	1	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104B_chrX_55138102_55166185	1/1	c0001	348	295	78	43	129	11	32	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	c0002	348	1	0	1	0	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM107A_chr3_58559117_58582391	1/1	c0001	435	371	58	61	198	13	39	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	c0002	435	47	31	10	1	1	4	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	c0003	435	11	7	1	1	0	2	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	c0004	435	6	1	5	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	c0005	435	1	0	0	0	0	1	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	c0006	435	1	1	0	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	c0007	435	1	0	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107B_chr10_14513557_14779897	1/1	c0001	921	230	75	44	79	8	22	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	c0002	921	31	0	2	26	0	3	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	c0003	921	5	0	0	3	0	2	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	c0004	921	2	0	0	0	0	2	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	c0005	921	2	0	0	1	0	1	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	c0006	921	1	0	0	1	0	0	copy fasta	FAM107B	chr10	14513557	14779897