JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM107B_chr10_14513557_14779897	0/0	c0007	921	1	1	0	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM110A_chr20_828715_851277	0/1	c0001	888	353	68	71	173	7	33	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	1/0	c0002	888	63	12	6	32	3	9	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	c0003	888	7	7	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	c0004	888	6	6	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	c0005	888	3	3	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	c0006	888	2	0	0	0	0	2	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	c0007	888	1	0	1	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	c0008	888	1	0	0	1	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110B_chr8_57989523_58153784	1/1	c0001	1113	298	88	54	118	12	24	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	c0002	1113	1	1	0	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	c0003	1113	1	1	0	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110C_chr2_33814_51505	0/1	c0001	966	410	86	69	190	16	48	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	c0002	966	9	0	0	9	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	c0003	967	7	0	0	7	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	c0004	966	4	4	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	c0005	966	3	3	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	c0006	966	2	0	0	2	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	c0007	966	1	0	0	1	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	c0008	966	1	0	1	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	c0009	966	1	1	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	c0010	966	1	0	0	1	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	1/0	c0011	966	1	0	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	c0012	966	1	0	0	1	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	c0013	966	1	0	0	1	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110D_chr1_26154079_26168962	1/1	c0001	816	185	90	34	29	8	22	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	c0002	816	132	0	21	98	2	11	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	c0003	816	86	7	21	47	4	7	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	c0004	816	4	2	2	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	c0005	816	1	0	0	1	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	c0006	816	1	0	1	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	c0007	816	1	0	0	1	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	c0008	816	1	1	0	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	c0009	816	1	0	1	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM111A_chr11_59137856_59160039	1/1	c0001	1836	270	54	48	125	13	28	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0002	1836	143	25	28	72	4	14	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0003	1836	6	6	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0004	1836	5	5	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0005	1836	3	3	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0006	1836	3	0	2	0	0	1	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0007	1836	2	2	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0008	1836	1	0	0	0	1	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0009	1846	1	1	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0010	1836	1	1	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0011	1836	1	1	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0012	1836	1	0	0	1	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0013	1836	1	0	1	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0014	1836	1	0	0	1	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0015	1836	1	0	0	1	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	c0016	1836	1	0	0	0	0	1	copy fasta	FAM111A	chr11	59137856	59160039