JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM111A_chr11_59137856_59160039	0/0	c0017	1836	1	0	1	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111B_chr11_59102237_59132412	1/1	c0001	2205	316	73	61	131	13	36	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	c0002	2205	56	15	6	34	0	1	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	c0003	2205	21	0	1	19	0	1	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	c0004	2205	4	0	0	4	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	c0005	2205	3	2	1	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	c0006	2205	3	0	0	3	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	c0007	2205	2	2	0	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	c0008	2205	2	2	0	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	c0009	2205	1	0	0	0	1	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	c0010	2205	1	1	0	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	c0011	2205	1	0	0	0	0	1	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	c0012	2205	1	0	0	1	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	c0013	2205	1	1	0	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	c0014	2205	1	0	0	0	0	1	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	c0015	2205	1	0	1	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM114A1_chr4_38862806_38950739	0/1	c0001	1692	142	31	25	60	4	21	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	1/0	c0002	1692	68	4	21	32	2	8	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0003	1692	32	17	4	10	1	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0004	1692	26	8	0	18	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0005	1692	10	1	0	8	0	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0006	1692	7	1	3	0	1	2	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0007	1692	6	0	4	0	1	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0008	1692	6	0	0	6	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0009	1692	6	1	1	1	1	2	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0010	1692	4	0	4	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0011	1692	4	2	1	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0012	1692	3	1	0	0	0	2	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0013	1692	3	0	0	3	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0014	1692	3	3	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0015	1692	3	3	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0016	1692	2	1	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0017	1692	2	0	1	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0018	1692	2	0	2	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0019	1692	2	2	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0020	1692	2	1	1	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0021	1692	2	0	0	1	0	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0022	1692	2	2	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0023	1692	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0024	1692	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0025	1692	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0026	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0027	1692	1	0	0	0	0	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0028	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0029	1692	1	0	1	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0030	1692	1	0	0	0	0	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0031	1692	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0032	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0033	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0034	1692	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739