JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM114A1_chr4_38862806_38950739	0/0	c0035	1692	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0036	1692	1	0	0	0	0	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0037	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0038	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0039	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0040	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0041	1692	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0042	1692	1	0	0	0	0	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0043	1692	1	0	1	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0044	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0045	1692	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0046	1692	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0047	1692	1	0	0	0	0	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0048	1692	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0049	1692	1	0	0	0	0	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0050	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0051	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0052	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0053	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0054	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0055	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0056	1692	1	0	1	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	c0057	1692	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A2_chr5_153985148_154043910	0/0	c0001	1518	215	49	34	99	5	28	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	1/1	c0002	1518	75	15	17	29	1	11	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	c0003	1518	29	13	7	4	4	1	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	c0004	1518	8	0	4	0	2	2	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	c0005	1518	7	7	0	0	0	0	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	c0006	1518	2	0	0	2	0	0	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	c0007	1518	2	2	0	0	0	0	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	c0008	1518	2	2	0	0	0	0	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	c0009	1518	1	0	0	1	0	0	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	c0010	1518	1	1	0	0	0	0	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	c0011	1518	1	1	0	0	0	0	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	c0012	1518	1	0	0	1	0	0	copy fasta	FAM114A2	chr5	153985148	154043910
FAM117A_chr17_49705332_49769131	1/1	c0001	1362	293	84	61	110	7	29	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	c0002	1362	28	5	10	9	2	2	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	c0003	1362	5	4	0	0	0	1	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	c0004	1362	3	3	0	0	0	0	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	c0005	1362	2	0	0	0	1	1	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	c0006	1362	2	0	0	1	0	1	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	c0007	1362	1	0	1	0	0	0	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	c0008	1362	1	0	0	1	0	0	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	c0009	1362	1	0	0	1	0	0	copy fasta	FAM117A	chr17	49705332	49769131
FAM117B_chr2_202629969_202774757	1/1	c0001	1770	272	46	55	123	6	40	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	c0002	1773	29	24	5	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	c0003	1776	9	9	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	c0004	1770	4	0	4	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	c0005	1773	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	c0006	1770	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757