JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM117B_chr2_202629969_202774757	0/0	c0007	1770	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	c0008	1770	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM118A_chr22_45304934_45346955	0/1	c0001	1010	225	79	34	92	4	15	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0002	1074	120	4	34	53	14	15	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	1/0	c0003	1074	49	7	3	29	0	9	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0004	1010	7	3	1	1	0	2	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0005	1074	2	1	0	0	0	1	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0006	1074	2	0	0	2	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0007	1010	1	0	1	0	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0008	1010	1	1	0	0	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0009	1010	1	0	0	1	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0010	1074	1	1	0	0	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0011	1156	1	0	1	0	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0012	1016	1	0	0	1	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0013	2058	1	0	0	1	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0014	2222	1	0	0	1	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0015	2468	1	0	0	1	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0016	2796	1	0	0	1	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	c0017	1074	1	0	0	1	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118B_chr11_126206782_126267968	1/1	c0001	1056	332	74	64	135	15	42	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	c0002	1056	6	6	0	0	0	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	c0003	1056	3	3	0	0	0	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	c0004	1056	2	2	0	0	0	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	c0005	1056	1	1	0	0	0	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	c0006	1056	1	0	0	1	0	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	c0007	1056	1	0	0	0	1	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM120AOS_chr9_93438332_93458581	1/1	c0001	771	247	60	43	108	12	22	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	c0002	771	118	4	27	78	6	3	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	c0003	771	32	26	2	3	0	1	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	c0004	771	12	0	2	8	0	2	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	c0005	771	6	6	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	c0006	771	4	0	0	4	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	c0007	771	1	1	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	c0008	771	1	1	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	c0009	771	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120A_chr9_93446685_93571112	0/1	c0001	3357	131	18	30	70	6	6	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	1/0	c0002	3357	109	27	16	47	8	10	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	c0003	3357	60	34	11	12	2	1	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	c0004	3357	5	0	0	5	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	c0005	3357	4	4	0	0	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	c0006	3357	3	3	0	0	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	c0007	3357	1	0	0	0	0	1	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	c0008	3357	1	1	0	0	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	c0009	3357	1	0	0	1	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	c0010	3357	1	0	0	1	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	c0011	3357	1	0	1	0	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	c0012	3357	1	1	0	0	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120B_chr6_170301758_170412067	0/1	c0001	2733	99	32	35	8	5	18	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0002	2733	93	28	19	33	2	11	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0003	2769	46	3	10	27	1	5	copy fasta	FAM120B	chr6	170301758	170412067