JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM120B_chr6_170301758_170412067	0/0	c0004	2769	22	0	6	16	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0005	2733	7	7	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0006	2733	4	1	0	3	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0007	2733	4	4	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0008	2733	2	2	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0009	2733	2	2	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0010	2733	2	1	1	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0011	2769	1	0	0	1	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0012	2733	1	0	0	1	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0013	2733	1	1	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0014	2733	1	1	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0015	2733	1	0	1	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0016	2733	1	0	0	1	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0017	2733	1	0	0	1	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	c0018	2733	1	0	0	1	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120C_chrX_54063324_54188254	1/1	c0001	3291	177	47	28	81	3	16	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	c0002	3297	4	0	3	0	1	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	c0003	3291	2	2	0	0	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	c0004	3291	1	1	0	0	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	c0005	3291	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	c0006	3290	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	c0007	3288	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	c0008	3291	1	0	0	0	1	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	c0009	3291	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	c0010	3293	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM124A_chr13_51217398_51289239	1/1	c0001	1641	325	54	56	163	12	38	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0002	1641	36	13	7	11	3	2	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0003	1641	12	11	1	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0004	1641	7	2	0	5	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0005	1641	6	6	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0006	1641	4	1	0	3	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0007	1641	3	3	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0008	1641	2	0	0	2	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0009	1641	2	2	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0010	1641	1	1	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0011	1641	1	1	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0012	1641	1	0	0	0	1	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0013	1641	1	0	1	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0014	1641	1	1	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0015	1641	1	0	1	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0016	1641	1	0	0	1	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0017	1641	1	1	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	c0018	1641	1	0	0	1	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124B_chr2_224373698_224407107	1/1	c0001	1368	314	64	67	139	9	33	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	c0002	1368	78	5	11	50	3	9	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	c0003	1368	16	9	0	6	0	1	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	c0004	1368	9	5	1	1	2	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	c0005	1368	8	7	1	0	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	c0006	1368	6	0	0	6	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	c0007	1368	6	6	0	0	0	0	copy fasta	FAM124B	chr2	224373698	224407107