JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM124B_chr2_224373698_224407107	0/0	c0008	1368	2	2	0	0	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	c0009	1368	1	0	0	1	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	c0010	1368	1	0	0	0	0	1	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	c0011	1368	1	0	0	1	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM131A_chr3_184332600_184351275	1/0	c0001	1101	433	93	75	202	16	46	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	c0002	1101	6	0	2	4	0	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/1	c0003	1101	5	0	2	0	2	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	c0004	1101	2	0	0	2	0	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	c0005	1101	1	0	1	0	0	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	c0006	1101	1	1	0	0	0	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131B_chr7_143348400_143367713	1/1	c0001	1083	340	82	59	145	13	39	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	c0002	1083	118	9	26	69	5	9	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	c0003	1083	2	0	0	0	0	2	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	c0004	1083	1	0	0	1	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	c0005	1083	1	0	0	1	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	c0006	1083	1	0	0	1	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	c0007	1083	1	1	0	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	c0008	1083	1	0	0	1	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	c0009	1083	1	1	0	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	c0010	1083	1	0	1	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	c0011	1083	1	1	0	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131C_chr1_16052769_16078651	0/0	c0001	843	161	7	24	114	1	15	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/1	c0002	843	67	24	22	1	9	10	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0003	843	56	31	16	0	4	5	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	1/0	c0004	843	35	1	4	26	0	3	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0005	843	14	11	2	0	0	1	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0006	843	11	10	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0007	843	5	0	0	3	1	1	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0008	843	4	4	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0009	843	3	1	0	0	1	1	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0010	843	3	2	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0011	843	3	3	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0012	843	1	0	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0013	843	1	1	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0014	843	1	1	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0015	843	1	0	0	1	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0016	843	1	0	0	1	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0017	843	1	0	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0018	843	1	1	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0019	843	1	0	0	0	0	1	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0020	843	1	0	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0021	843	1	0	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0022	843	1	0	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0023	843	1	0	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0024	843	1	0	0	0	0	1	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	c0025	843	1	1	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM133A_chrX_93669206_93717265	1/1	c0001	747	291	70	49	129	10	31	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	c0002	747	3	0	2	0	1	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	c0003	747	2	2	0	0	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	c0004	747	1	0	0	0	0	1	copy fasta	FAM133A	chrX	93669206	93717265