JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM133A_chrX_93669206_93717265	0/0	c0005	744	1	0	0	1	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133B_chr7_92555758_92595390	1/1	c0001	744	326	82	46	153	10	33	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	c0002	744	1	0	0	0	0	1	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	c0003	744	1	0	0	1	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM135A_chr6_70408508_70566174	1/0	c0001	4548	91	29	29	16	5	11	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0002	4548	65	10	16	32	2	5	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/1	c0003	4548	51	3	7	27	5	8	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0004	4548	31	28	3	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0005	4548	8	7	1	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0006	4548	5	0	0	5	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0007	4548	2	0	0	2	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0008	4548	2	0	2	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0009	4548	2	2	0	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0010	4548	2	2	0	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0011	4548	1	0	0	1	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0012	4548	1	1	0	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0013	4548	1	0	1	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0014	4548	1	1	0	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0015	4548	1	1	0	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0016	4548	1	0	1	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0017	4548	1	1	0	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0018	4548	1	1	0	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	c0019	4548	1	0	0	1	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135B_chr8_138125023_138502261	1/0	c0001	4221	53	26	11	8	2	5	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/1	c0002	4221	52	6	13	23	4	5	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0003	4221	21	2	1	16	0	2	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0004	4221	20	9	6	2	1	2	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0005	4221	16	10	2	0	1	3	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0006	4221	11	8	2	1	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0007	4221	6	1	1	1	0	3	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0008	4221	5	0	0	4	0	1	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0009	4221	3	3	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0010	4221	2	2	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0011	4221	2	2	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0012	4221	1	0	1	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0013	4221	1	0	1	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0014	4221	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0015	4221	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0016	4221	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0017	4221	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0018	4221	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0019	4221	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0020	4221	1	0	0	1	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0021	4221	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0022	4221	1	0	0	0	0	1	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0023	4221	1	0	0	1	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0024	4221	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0025	4221	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0026	4221	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0027	4221	1	0	0	1	0	0	copy fasta	FAM135B	chr8	138125023	138502261