JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM135B_chr8_138125023_138502261	0/0	c0028	4221	1	0	0	1	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0029	4221	1	0	0	1	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0030	4221	1	0	0	0	0	1	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0031	4221	1	0	0	0	0	1	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	c0032	4221	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM136A_chr2_70290976_70307067	1/1	c0001	738	209	19	36	118	9	25	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	c0002	738	112	18	17	62	3	12	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	c0003	738	71	25	22	22	0	2	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	c0004	738	29	20	4	0	0	5	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	c0005	738	5	4	1	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	c0006	738	3	3	0	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	c0007	738	3	0	0	3	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	c0008	738	3	3	0	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	c0009	738	3	3	0	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	c0010	738	1	1	0	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	c0011	738	1	0	0	1	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM13A_chr4_88720960_89062185	1/1	c0001	3072	75	10	23	32	5	3	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0002	3072	34	4	9	14	1	6	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0003	3072	28	6	1	17	0	4	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0004	3072	20	16	3	1	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0005	3072	12	11	1	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0006	3072	7	7	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0007	3072	3	3	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0008	3072	3	3	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0009	3072	2	2	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0010	3072	2	0	2	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0011	3072	2	0	0	2	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0012	3072	2	2	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0013	3072	2	0	1	0	0	1	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0014	3072	2	2	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0015	3072	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0016	3072	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0017	3072	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0018	3072	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0019	3072	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0020	3072	1	0	0	1	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0021	3072	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0022	3072	1	0	0	0	0	1	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0023	3072	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0024	3072	1	0	0	1	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0025	3072	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0026	3072	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0027	3072	1	0	0	0	0	1	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	c0028	3072	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13B_chr5_137932960_138038079	0/1	c0001	2814	302	83	72	106	12	28	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	1/0	c0002	2814	10	9	0	0	0	0	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	c0003	2814	5	2	1	0	1	1	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	c0004	2814	2	0	2	0	0	0	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	c0005	2814	1	0	1	0	0	0	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	c0006	2814	1	0	0	0	1	0	copy fasta	FAM13B	chr5	137932960	138038079