JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM13B_chr5_137932960_138038079	0/0	c0007	2814	1	0	0	0	0	1	copy fasta	FAM13B	chr5	137932960	138038079
FAM13C_chr10_59241133_59367549	1/1	c0001	1758	184	70	29	59	2	22	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	c0002	1758	6	4	2	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	c0003	1758	4	2	2	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	c0004	1758	3	3	0	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	c0005	1758	2	2	0	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	c0006	1758	1	0	0	1	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	c0007	1758	1	1	0	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	c0008	1758	1	1	0	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	c0009	1758	1	0	1	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	c0010	1758	1	1	0	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM149A_chr4_186099704_186180337	0/0	c0001	2319	94	6	15	61	3	9	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	1/0	c0002	2319	43	0	5	29	2	6	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0003	2319	36	6	5	21	0	4	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0004	2319	31	16	7	3	0	5	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0005	2319	23	1	2	16	2	2	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/1	c0006	2319	20	7	5	5	1	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0007	2319	15	5	5	3	0	2	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0008	2319	10	1	0	8	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0009	2319	9	6	3	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0010	2319	9	0	4	3	1	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0011	2319	8	2	4	2	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0012	2319	8	0	4	1	1	2	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0013	2319	7	7	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0014	2319	6	0	2	2	1	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0015	2319	4	1	0	3	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0016	2319	3	3	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0017	2319	3	2	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0018	2319	3	3	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0019	2319	3	2	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0020	2319	3	0	0	2	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0021	2319	2	0	0	2	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0022	2319	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0023	2319	2	0	0	2	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0024	2319	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0025	2319	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0026	2319	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0027	2319	2	1	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0028	2319	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0029	2319	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0030	2319	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0031	2319	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0032	2319	1	0	0	0	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0033	2319	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0034	2319	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0035	2319	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0036	2319	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0037	2319	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0038	2319	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0039	2319	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337