JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM149A_chr4_186099704_186180337	0/0	c0040	2319	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0041	2319	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0042	2319	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0043	2319	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0044	2319	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0045	2319	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0046	2319	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0047	2319	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0048	2319	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0049	2319	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0050	2319	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0051	2319	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0052	2319	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0053	2319	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0054	2319	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0055	2319	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0056	2319	1	0	0	0	1	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0057	2319	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0058	2319	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0059	2319	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0060	2319	1	0	0	0	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0061	2319	1	0	0	0	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	c0062	2319	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149B1_chr10_73163119_73249504	0/0	c0001	1749	124	51	18	41	0	14	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	c0002	1749	69	4	4	53	0	8	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	c0003	1734	35	17	2	16	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	c0004	1749	1	0	1	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	c0005	1734	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	c0006	1749	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	c0007	1734	1	0	1	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	c0008	1734	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	c0009	1749	1	0	0	1	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	c0010	1749	1	0	0	1	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	c0011	1749	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM151A_chr1_54604181_54628525	1/1	c0001	1758	132	21	25	64	9	11	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0002	1758	105	18	30	35	5	17	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0003	1758	66	2	8	45	0	11	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0004	1758	46	6	8	30	0	2	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0005	1758	27	20	4	3	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0006	1758	12	11	1	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0007	1758	10	0	0	10	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0008	1758	10	9	1	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0009	1758	7	0	0	7	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0010	1758	5	1	0	2	1	1	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0011	1758	5	5	0	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0012	1729	5	0	3	0	1	1	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0013	1758	4	0	0	4	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0014	1758	3	3	0	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0015	1758	3	0	0	3	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0016	1758	1	1	0	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525