JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM151A_chr1_54604181_54628525	0/0	c0017	1758	1	1	0	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0018	1758	1	0	0	1	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0019	1758	1	0	0	1	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0020	1758	1	1	0	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0021	1758	1	1	0	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0022	1758	1	0	0	0	0	1	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	c0023	1758	1	0	0	1	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151B_chr5_80483100_80547563	0/0	c0001	831	241	72	45	87	9	28	copy fasta	FAM151B	chr5	80483100	80547563
FAM151B_chr5_80483100_80547563	1/1	c0002	831	103	14	19	55	1	12	copy fasta	FAM151B	chr5	80483100	80547563
FAM151B_chr5_80483100_80547563	0/0	c0003	831	10	1	5	0	2	2	copy fasta	FAM151B	chr5	80483100	80547563
FAM151B_chr5_80483100_80547563	0/0	c0004	831	1	1	0	0	0	0	copy fasta	FAM151B	chr5	80483100	80547563
FAM151B_chr5_80483100_80547563	0/0	c0005	831	1	0	1	0	0	0	copy fasta	FAM151B	chr5	80483100	80547563
FAM153A_chr5_177718364_177787899	0/1	c0001	933	29	8	6	12	0	2	copy fasta	FAM153A	chr5	177718364	177787899
FAM153A_chr5_177718364_177787899	0/0	c0002	933	3	3	0	0	0	0	copy fasta	FAM153A	chr5	177718364	177787899
FAM153A_chr5_177718364_177787899	1/0	c0003	933	1	0	0	0	0	0	copy fasta	FAM153A	chr5	177718364	177787899
FAM153A_chr5_177718364_177787899	0/0	c0004	933	1	1	0	0	0	0	copy fasta	FAM153A	chr5	177718364	177787899
FAM153A_chr5_177718364_177787899	0/0	c0005	933	1	1	0	0	0	0	copy fasta	FAM153A	chr5	177718364	177787899
FAM153A_chr5_177718364_177787899	0/0	c0006	933	1	1	0	0	0	0	copy fasta	FAM153A	chr5	177718364	177787899
FAM156A_chrX_52942254_52963518	0/0	c0001	642	156	44	40	48	5	19	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	c0002	642	1	0	0	0	1	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	c0003	642	1	1	0	0	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	c0004	643	1	1	0	0	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	c0005	643	1	0	0	1	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	c0006	643	1	0	0	1	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156B_chrX_52892330_52913560	0/0	c0001	642	181	46	27	88	3	17	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	c0002	641	1	0	0	1	0	0	copy fasta	FAM156B	chrX	52892330	52913560
FAM161A_chr2_61819848_61859060	0/1	c0001	2151	215	61	30	93	9	21	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0002	2151	67	8	9	38	4	8	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0003	2151	54	1	16	32	2	3	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0004	2151	37	4	12	15	2	4	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0005	2151	6	6	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	1/0	c0006	2151	4	0	2	0	1	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0007	2151	2	2	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0008	2151	2	0	0	0	0	2	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0009	2151	1	0	0	1	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0010	2151	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0011	2151	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0012	2151	1	0	0	0	0	1	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0013	2151	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0014	2151	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0015	2151	1	0	0	1	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0016	2151	1	0	1	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0017	2151	1	0	0	0	0	1	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0018	2151	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0019	2151	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0020	2151	1	0	0	0	0	1	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	c0021	2151	1	0	0	0	0	1	copy fasta	FAM161A	chr2	61819848	61859060
FAM161B_chr14_73927276_73955094	1/1	c0001	1944	224	49	48	93	9	23	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0002	1944	108	5	9	82	2	10	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0003	1944	43	16	10	5	2	10	copy fasta	FAM161B	chr14	73927276	73955094