JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM161B_chr14_73927276_73955094	0/0	c0004	1944	16	0	4	12	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0005	1944	11	9	1	1	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0006	1944	9	8	0	0	0	1	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0007	1944	7	0	0	7	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0008	1944	5	0	3	0	1	1	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0009	1944	5	1	2	0	2	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0010	1944	3	3	0	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0011	1944	2	2	0	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0012	1944	2	2	0	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0013	1944	1	1	0	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0014	1944	1	0	1	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0015	1944	1	1	0	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0016	1944	1	0	0	1	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0017	1944	1	0	0	1	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0018	1944	1	1	0	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	c0019	1944	1	0	0	0	0	1	copy fasta	FAM161B	chr14	73927276	73955094
FAM162A_chr3_122379182_122417334	1/0	c0001	465	403	94	70	179	16	43	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	c0002	465	15	0	0	13	0	2	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/1	c0003	465	3	0	1	0	0	1	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	c0004	465	1	0	1	0	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162B_chr6_116747197_116770719	1/1	c0001	489	415	82	68	212	14	37	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	c0002	489	48	12	12	19	3	2	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	c0003	489	7	1	0	1	0	5	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	c0004	489	3	3	0	0	0	0	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	c0005	489	1	0	0	0	1	0	copy fasta	FAM162B	chr6	116747197	116770719
FAM163A_chr1_179738291_179821198	1/1	c0001	504	210	75	35	60	12	26	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	c0002	504	16	15	1	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163B_chr9_133572081_133614389	1/1	c0001	501	359	87	75	133	18	44	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	c0002	501	11	0	0	11	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	c0003	501	4	3	1	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	c0004	501	1	0	0	1	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	c0005	501	1	0	0	1	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	c0006	501	1	1	0	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	c0007	501	1	1	0	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	c0008	501	1	1	0	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	c0009	501	1	0	0	1	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	c0010	501	1	0	0	1	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	c0011	501	1	1	0	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM166A_chr9_137238599_137252751	0/0	c0001	954	325	83	65	131	14	32	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0002	954	32	10	2	13	2	5	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0003	954	17	0	0	17	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0004	954	13	0	8	5	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0005	954	5	0	0	0	0	5	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0006	954	3	0	0	3	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0007	954	3	3	0	0	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0008	954	2	0	0	2	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0009	954	2	0	1	0	0	1	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0010	954	1	1	0	0	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0011	954	1	0	1	0	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0012	954	1	0	0	0	0	1	copy fasta	FAM166A	chr9	137238599	137252751