JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM166A_chr9_137238599_137252751	0/0	c0013	954	1	0	0	1	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0014	954	1	0	1	0	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0015	954	1	1	0	0	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0016	954	1	0	0	1	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0017	954	1	0	0	1	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0018	954	1	0	0	1	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0019	954	1	0	0	1	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0020	954	1	0	1	0	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0021	954	1	0	0	0	0	1	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0022	954	1	1	0	0	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0023	954	1	0	1	0	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0024	954	1	1	0	0	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	c0025	954	1	0	0	0	0	1	copy fasta	FAM166A	chr9	137238599	137252751
FAM166B_chr9_35556831_35568878	1/1	c0001	828	210	70	24	80	8	26	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	c0002	828	133	15	48	52	6	12	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	c0003	832	80	1	7	65	1	6	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	c0004	832	4	3	0	0	0	1	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	c0005	832	3	3	0	0	0	0	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	c0006	828	2	1	1	0	0	0	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	c0007	828	2	0	0	0	1	1	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	c0008	828	1	1	0	0	0	0	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	c0009	828	1	0	0	1	0	0	copy fasta	FAM166B	chr9	35556831	35568878
FAM166C_chr2_26557587_26584524	0/0	c0001	606	146	18	42	70	6	10	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	c0002	606	131	10	13	78	5	25	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	1/1	c0003	606	118	58	15	37	1	5	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	c0004	606	4	2	2	0	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	c0005	606	4	4	0	0	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	c0006	606	2	0	1	1	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	c0007	606	1	1	0	0	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	c0008	606	1	1	0	0	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	c0009	606	1	0	1	0	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	c0010	606	1	0	0	0	0	1	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	c0011	606	1	0	0	1	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	c0012	606	1	0	0	1	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	c0013	606	1	0	0	0	0	1	copy fasta	FAM166C	chr2	26557587	26584524
FAM167A_chr8_11416476_11471753	0/1	c0001	645	334	86	58	134	10	45	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	c0002	645	25	5	14	0	4	2	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	c0003	645	4	0	1	2	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	c0004	645	2	2	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	c0005	645	2	0	1	1	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	c0006	645	2	0	0	2	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	c0007	645	1	0	0	1	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	c0008	645	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	c0009	645	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	1/0	c0010	645	1	0	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	c0011	645	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167B_chr1_32242222_32253856	1/1	c0001	492	287	81	44	108	15	37	copy fasta	FAM167B	chr1	32242222	32253856
FAM167B_chr1_32242222_32253856	0/0	c0002	492	78	7	15	46	1	9	copy fasta	FAM167B	chr1	32242222	32253856
FAM167B_chr1_32242222_32253856	0/0	c0003	492	4	3	1	0	0	0	copy fasta	FAM167B	chr1	32242222	32253856
FAM167B_chr1_32242222_32253856	0/0	c0004	492	3	1	0	0	2	0	copy fasta	FAM167B	chr1	32242222	32253856