JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM167B_chr1_32242222_32253856	0/0	c0005	492	3	1	2	0	0	0	copy fasta	FAM167B	chr1	32242222	32253856
FAM167B_chr1_32242222_32253856	0/0	c0006	492	1	1	0	0	0	0	copy fasta	FAM167B	chr1	32242222	32253856
FAM167B_chr1_32242222_32253856	0/0	c0007	492	1	0	0	1	0	0	copy fasta	FAM167B	chr1	32242222	32253856
FAM167B_chr1_32242222_32253856	0/0	c0008	492	1	0	0	1	0	0	copy fasta	FAM167B	chr1	32242222	32253856
FAM168A_chr11_73395487_73603112	0/0	c0001	708	90	55	9	16	4	6	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	1/1	c0002	708	85	28	16	27	6	6	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	c0003	708	2	2	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	c0004	708	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	c0005	708	1	0	1	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	c0006	708	1	0	0	1	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168B_chr2_131042876_131098460	1/1	c0001	588	260	94	58	68	10	28	copy fasta	FAM168B	chr2	131042876	131098460
FAM169A_chr5_74772574_74871387	1/1	c0001	2013	261	55	55	98	13	38	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	c0002	2013	27	24	3	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	c0003	2013	14	9	2	3	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	c0004	2013	3	0	3	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	c0005	2013	1	0	0	1	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	c0006	2013	1	0	0	0	1	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	c0007	2013	1	0	1	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM170A_chr5_119624558_119640822	1/1	c0001	993	243	66	46	97	8	24	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	c0002	993	186	28	29	97	10	22	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	c0003	993	2	0	0	2	0	0	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	c0004	993	1	0	0	0	0	1	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	c0005	993	1	1	0	0	0	0	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	c0006	993	1	0	1	0	0	0	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	c0007	993	1	0	0	0	0	1	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	c0008	993	1	1	0	0	0	0	copy fasta	FAM170A	chr5	119624558	119640822
FAM170B_chr10_49126154_49139021	1/0	c0001	852	213	57	35	97	7	16	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/1	c0002	852	86	8	21	43	3	10	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	c0003	852	32	18	1	10	0	3	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	c0004	852	18	1	8	0	2	7	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	c0005	852	15	1	0	14	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	c0006	852	11	2	1	2	0	6	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	c0007	852	3	0	0	3	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	c0008	852	3	0	3	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	c0009	852	3	2	1	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	c0010	852	2	2	0	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	c0011	852	1	1	0	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	c0012	852	1	1	0	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	c0013	852	1	1	0	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	c0014	852	1	0	0	1	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM171A1_chr10_15206643_15376289	1/0	c0001	2673	235	74	41	81	12	26	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0002	2673	25	0	9	11	1	4	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0003	2673	11	5	0	6	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0004	2673	11	0	0	11	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0005	2673	4	0	0	4	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0006	2673	3	0	0	3	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0007	2673	2	2	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0008	2673	2	1	1	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0009	2673	2	0	1	0	1	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0010	2673	1	1	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289