JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM171A1_chr10_15206643_15376289	0/0	c0011	2673	1	0	0	1	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0012	2673	1	1	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0013	2673	1	0	0	1	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0014	2673	1	1	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0015	2673	1	0	0	1	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0016	2673	1	0	0	1	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	c0017	2673	1	1	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A2_chr17_44348215_44368853	1/1	c0001	2481	324	59	53	157	16	37	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	c0002	2481	32	0	1	28	0	3	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	c0003	2481	17	1	5	8	1	2	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	c0004	2481	16	10	3	0	1	2	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	c0005	2481	13	12	1	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	c0006	2481	7	7	0	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	c0007	2481	2	2	0	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	c0008	2481	1	0	0	0	0	1	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	c0009	2481	1	1	0	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	c0010	2481	1	0	0	0	0	1	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	c0011	2481	1	0	1	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	c0012	2481	1	0	0	1	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171B_chr2_186689060_186770959	0/0	c0001	2484	78	3	19	44	4	8	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/1	c0002	2484	73	35	12	9	3	13	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0003	2487	56	13	10	22	3	8	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0004	2484	43	20	4	17	0	2	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0005	2484	37	0	13	11	3	10	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0006	2487	7	0	6	0	1	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	1/0	c0007	2481	6	5	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0008	2484	5	4	1	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0009	2484	3	3	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0010	2487	3	0	2	0	0	1	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0011	2490	3	3	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0012	2484	2	2	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0013	2484	2	2	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0014	2484	2	2	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0015	2484	2	0	1	0	0	1	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0016	2484	1	0	0	1	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0017	2484	1	0	0	1	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0018	2484	1	0	0	1	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0019	2484	1	0	0	0	0	1	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0020	2484	1	1	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0021	2484	1	0	0	1	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0022	2487	1	1	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0023	2487	1	0	1	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0024	2490	1	0	1	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	c0025	2481	1	0	0	1	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM172A_chr5_93612725_94116663	1/1	c0001	1251	123	54	16	38	3	10	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	c0002	1251	2	2	0	0	0	0	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	c0003	1251	1	0	0	0	1	0	copy fasta	FAM172A	chr5	93612725	94116663
FAM174A_chr5_100530374_100591741	1/1	c0001	573	230	59	39	102	11	17	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	c0002	573	54	19	22	8	3	2	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	c0003	573	8	7	1	0	0	0	copy fasta	FAM174A	chr5	100530374	100591741