JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM174A_chr5_100530374_100591741	0/0	c0004	573	3	3	0	0	0	0	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	c0005	573	1	0	0	1	0	0	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	c0006	573	1	0	0	1	0	0	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	c0007	573	1	0	0	0	0	1	copy fasta	FAM174A	chr5	100530374	100591741
FAM174B_chr15_92612448_92660775	0/1	c0001	474	363	71	70	169	11	41	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	1/0	c0002	480	13	11	1	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	c0003	474	5	5	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	c0004	474	3	2	1	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	c0005	474	2	0	0	2	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	c0006	474	2	2	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	c0007	474	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	c0008	474	1	0	0	0	0	1	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	c0009	474	1	0	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	c0010	474	1	0	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	c0011	474	1	0	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	c0012	474	1	0	0	0	1	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174C_chr19_1270530_1284228	0/1	c0001	1932	159	37	38	49	7	27	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0002	1876	33	14	6	4	2	7	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0003	1876	8	0	6	1	0	1	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0004	1932	5	4	1	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0005	1932	5	0	2	0	0	3	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0006	1939	4	4	0	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0007	1869	4	0	0	3	1	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0008	1939	3	3	0	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0009	1939	3	3	0	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0010	1876	3	0	2	0	1	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0011	1932	2	0	2	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0012	1932	2	1	0	1	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0013	1876	2	2	0	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	1/0	c0014	1876	2	0	1	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0015	1932	1	1	0	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0016	1932	1	0	0	1	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0017	1932	1	0	0	1	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0018	1932	1	0	0	1	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0019	1869	1	0	1	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0020	1995	1	0	1	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0021	1932	1	0	0	1	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0022	1932	1	0	0	1	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0023	1939	1	1	0	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0024	1939	1	1	0	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0025	1932	1	1	0	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0026	1932	1	1	0	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0027	1922	1	0	1	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0028	1932	1	1	0	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0029	1876	1	1	0	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0030	1896	1	0	0	1	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0031	1932	1	0	1	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0032	1939	1	1	0	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	c0033	1932	1	0	0	0	1	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM177A1_chr14_35041272_35088378	1/1	c0001	711	324	72	69	138	12	31	copy fasta	FAM177A1	chr14	35041272	35088378