JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM177A1_chr14_35041272_35088378	0/0	c0002	711	43	24	6	5	1	7	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	c0003	711	1	0	0	0	1	0	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	c0004	711	1	0	0	1	0	0	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	c0005	711	1	0	1	0	0	0	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177B_chr1_222732202_222756004	0/1	c0001	477	239	24	42	126	15	31	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	1/0	c0002	477	89	22	20	36	1	9	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	0/0	c0003	477	71	50	6	5	2	8	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	0/0	c0004	477	1	0	0	1	0	0	copy fasta	FAM177B	chr1	222732202	222756004
FAM178B_chr2_96870885_96991580	0/0	c0001	2040	80	33	13	27	1	6	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/1	c0002	2040	66	3	19	31	0	12	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0003	2040	30	15	1	12	0	2	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0004	2040	12	3	7	0	1	1	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0005	2040	9	8	1	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0006	2040	7	0	7	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0007	2040	6	6	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0008	2040	6	1	0	2	0	3	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	1/0	c0009	2040	4	0	0	1	0	2	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0010	2040	4	3	1	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0011	2040	4	2	0	2	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0012	2040	3	3	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0013	2040	2	0	0	2	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0014	2040	2	0	0	2	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0015	2040	2	2	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0016	2040	2	0	0	2	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0017	2040	1	0	0	1	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0018	2040	1	0	1	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0019	2040	1	1	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0020	2040	1	0	0	0	0	1	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0021	2040	1	1	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0022	2040	1	0	0	0	0	1	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0023	2040	1	1	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0024	2040	1	1	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0025	2040	1	1	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0026	2040	1	0	0	1	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	c0027	2040	1	0	0	1	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM180A_chr7_135724592_135753813	1/1	c0001	522	419	80	77	201	18	41	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	c0002	522	8	8	0	0	0	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	c0003	522	5	0	0	5	0	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	c0004	522	2	0	1	0	0	1	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	c0005	522	1	1	0	0	0	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	c0006	522	1	1	0	0	0	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180B_chr11_47581678_47594194	0/1	c0001	552	407	84	82	182	16	42	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	1/0	c0002	552	5	4	0	0	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	c0003	552	1	1	0	0	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	c0004	552	1	1	0	0	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM181A_chr14_93922344_93934608	0/1	c0001	879	410	85	66	203	12	43	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	c0002	879	21	13	3	0	2	3	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	c0003	879	2	0	0	0	0	2	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	c0004	879	2	0	2	0	0	0	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	c0005	879	1	0	0	1	0	0	copy fasta	FAM181A	chr14	93922344	93934608