Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADPRH_chr3_119574492_119594945	0/0	c0011	1074	1	0	1	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRM_chr17_10692594_10716558	1/1	c0001	1029	218	21	39	125	8	23	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	c0002	1029	169	68	29	54	5	13	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	c0003	1029	5	0	1	1	1	2	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	c0004	1029	3	0	0	2	0	1	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	c0005	1029	3	2	1	0	0	0	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	c0006	1029	1	0	0	0	0	1	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	c0007	1029	1	0	0	1	0	0	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	c0008	1029	1	0	0	1	0	0	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	c0009	1029	1	1	0	0	0	0	copy fasta	ADPRM	chr17	10692594	10716558
ADPRS_chr1_36083892_36098932	1/1	c0001	1092	251	57	49	101	10	32	copy fasta	ADPRS	chr1	36083892	36098932
ADPRS_chr1_36083892_36098932	0/0	c0002	1092	101	29	19	51	0	2	copy fasta	ADPRS	chr1	36083892	36098932
ADPRS_chr1_36083892_36098932	0/0	c0003	1092	54	5	4	43	0	2	copy fasta	ADPRS	chr1	36083892	36098932
ADPRS_chr1_36083892_36098932	0/0	c0004	1092	1	0	0	1	0	0	copy fasta	ADPRS	chr1	36083892	36098932
ADPRS_chr1_36083892_36098932	0/0	c0005	1092	1	0	0	1	0	0	copy fasta	ADPRS	chr1	36083892	36098932
ADPRS_chr1_36083892_36098932	0/0	c0006	1092	1	0	0	1	0	0	copy fasta	ADPRS	chr1	36083892	36098932
ADPRS_chr1_36083892_36098932	0/0	c0007	1092	1	1	0	0	0	0	copy fasta	ADPRS	chr1	36083892	36098932
ADRA1A_chr8_26763809_26872278	0/1	c0001	1401	242	64	31	120	7	19	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	1/0	c0002	1401	101	19	26	30	7	18	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0003	1401	14	3	5	5	0	1	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0004	1401	7	0	1	6	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0005	1401	4	0	4	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0006	1401	2	0	2	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0007	1401	2	0	2	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0008	1401	2	0	2	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0009	1401	2	0	1	0	1	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0010	1401	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0011	1401	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0012	1401	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0013	1401	1	0	0	1	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0014	1401	1	0	0	1	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0015	1401	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0016	1401	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0017	1401	1	0	0	0	0	1	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0018	1401	1	0	0	0	0	1	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0019	1401	1	0	0	1	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0020	1401	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	c0021	1401	1	0	0	0	1	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1B_chr5_159911482_159978012	1/0	c0001	1563	282	76	49	114	12	30	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/1	c0002	1563	95	11	17	56	0	10	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	c0003	1563	4	0	4	0	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	c0004	1563	1	1	0	0	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	c0005	1563	1	1	0	0	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	c0006	1563	1	1	0	0	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1D_chr20_4215630_4254287	1/1	c0001	1719	268	65	28	147	13	13	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	c0002	1719	74	15	21	30	4	4	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	c0003	1719	67	15	19	18	1	14	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	c0004	1719	25	0	4	12	0	9	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	c0005	1719	9	0	0	9	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	c0006	1719	2	0	0	0	0	2	copy fasta	ADRA1D	chr20	4215630	4254287