JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM181A_chr14_93922344_93934608	0/0	c0006	879	1	0	0	1	0	0	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	c0007	879	1	0	0	1	0	0	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	c0008	879	1	0	1	0	0	0	copy fasta	FAM181A	chr14	93922344	93934608
FAM181B_chr11_82724940_82738864	1/1	c0001	1281	136	9	29	70	8	18	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	c0002	1281	97	8	14	64	3	8	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	c0003	1281	59	50	3	0	3	3	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	c0004	1281	43	0	20	8	1	14	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	c0005	1281	36	14	6	11	1	4	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	c0006	1281	36	0	0	35	0	1	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	c0007	1281	8	0	0	8	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	c0008	1281	7	7	0	0	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	c0009	1281	1	0	0	1	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	c0010	1281	1	0	0	1	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	c0011	1281	1	0	0	1	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	c0012	1281	1	0	0	1	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM184A_chr6_118954763_119083664	1/1	c0001	3423	250	72	55	94	7	20	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	c0002	3423	17	3	5	4	1	4	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	c0003	3423	8	7	1	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	c0004	3423	5	0	5	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	c0005	3423	1	1	0	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	c0006	3423	1	1	0	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	c0007	3423	1	1	0	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	c0008	3423	1	1	0	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	c0009	3423	1	1	0	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	c0010	3423	1	1	0	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184B_chr4_17624306_17786621	0/0	c0001	3183	47	4	11	21	2	9	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/1	c0002	3183	32	4	10	8	3	6	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0003	3183	30	6	6	8	3	7	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0004	3183	11	8	3	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0005	3183	10	10	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0006	3183	10	0	0	8	0	2	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0007	3183	7	4	1	2	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0008	3183	6	3	1	1	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0009	3183	4	4	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0010	3183	4	4	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0011	3183	3	3	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0012	3183	3	3	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0013	3183	3	0	2	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0014	3183	3	0	0	0	0	3	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0015	3183	3	3	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0016	3183	3	3	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0017	3183	3	2	0	0	1	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0018	3183	2	2	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0019	3183	2	0	0	0	0	2	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0020	3183	2	1	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0021	3183	2	2	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0022	3183	2	0	0	2	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0023	3183	2	0	2	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0024	3183	2	0	0	2	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0025	3183	2	1	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621