JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM184B_chr4_17624306_17786621	0/0	c0026	3183	2	0	2	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0027	3183	1	0	0	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0028	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0029	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0030	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0031	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0032	3183	1	0	0	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0033	3183	1	0	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0034	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0035	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0036	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0037	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	1/0	c0038	3183	1	0	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0039	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0040	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0041	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0042	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0043	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0044	3183	1	0	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0045	3183	1	0	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0046	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0047	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0048	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0049	3183	1	0	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0050	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0051	3183	1	0	0	0	1	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0052	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0053	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0054	3183	1	0	0	0	1	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0055	3183	1	0	0	0	1	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0056	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0057	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0058	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0059	3183	1	0	0	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0060	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0061	3183	1	0	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0062	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0063	3183	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	c0064	3183	1	0	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM185A_chr7_102743999_102814225	0/0	c0001	1179	269	66	38	122	10	33	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	c0002	1179	46	7	4	30	2	3	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/1	c0003	1179	36	9	20	0	3	3	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	c0004	1179	18	0	5	9	1	3	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	1/0	c0005	1179	5	4	0	0	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	c0006	1179	3	2	1	0	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	c0007	1179	1	1	0	0	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	c0008	1179	1	0	0	1	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	c0009	1179	1	1	0	0	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM186A_chr12_50322309_50401609	0/0	c0001	7164	91	6	26	44	5	10	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0002	7164	73	16	2	51	0	4	copy fasta	FAM186A	chr12	50322309	50401609