JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM186A_chr12_50322309_50401609	0/1	c0003	7056	72	16	12	32	1	10	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0004	7056	13	1	8	0	3	1	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	1/0	c0005	7056	13	12	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0006	7164	11	0	7	4	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0007	7164	5	4	1	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0008	7164	4	4	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0009	7056	3	3	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0010	7164	3	0	3	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0011	7164	3	3	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0012	7164	3	3	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0013	7056	2	0	0	0	0	2	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0014	7056	2	2	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0015	7020	2	0	0	2	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0016	7164	2	2	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0017	7164	2	2	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0018	7164	2	2	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0019	7164	2	2	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0020	7056	1	0	0	1	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0021	7056	1	1	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0022	7164	1	0	0	0	0	1	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0023	7164	1	1	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0024	7164	1	1	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0025	7092	1	1	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0026	7056	1	0	0	1	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0027	7056	1	0	0	0	0	1	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0028	7056	1	1	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0029	7056	1	0	0	1	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0030	7056	1	0	0	0	0	1	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0031	7056	1	0	0	1	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0032	7056	1	1	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0033	7164	1	1	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0034	7164	1	0	0	1	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0035	7164	1	0	0	1	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0036	7164	1	0	0	0	0	1	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0037	7056	1	0	1	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0038	7164	1	1	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0039	7164	1	0	1	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0040	7164	1	0	0	0	1	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0041	7164	1	0	1	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0042	7164	1	0	0	1	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	c0043	7164	1	0	0	0	0	1	copy fasta	FAM186A	chr12	50322309	50401609
FAM186B_chr12_49582505_49610639	1/1	c0001	2682	166	23	49	51	10	31	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0002	2682	36	8	10	14	2	2	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0003	2682	13	12	1	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0004	2682	12	11	1	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0005	2682	11	11	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0006	2682	7	7	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0007	2682	4	2	2	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0008	2682	3	0	0	3	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0009	2682	2	2	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639