JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM186B_chr12_49582505_49610639	0/0	c0010	2682	2	2	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0011	2682	2	2	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0012	2682	1	1	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0013	2682	1	1	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0014	2682	1	1	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0015	2682	1	0	0	1	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0016	2682	1	1	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0017	2682	1	0	0	0	0	1	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0018	2682	1	0	0	1	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	c0019	2701	1	0	1	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM187A_chr17_44898433_44910390	1/0	c0001	1242	317	78	50	142	12	34	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	c0002	1245	66	10	9	40	1	6	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/1	c0003	1245	23	8	11	0	1	2	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	c0004	1242	7	0	2	0	3	2	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	c0005	1245	3	1	1	0	1	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	c0006	1245	2	0	0	0	0	2	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	c0007	1242	2	0	2	0	0	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	c0008	1242	2	0	0	2	0	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	c0009	1245	1	0	1	0	0	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	c0010	1245	1	1	0	0	0	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	c0011	1245	1	0	0	1	0	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	c0012	1242	1	0	0	1	0	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	c0013	1242	1	0	0	0	0	1	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	c0014	1242	1	0	0	0	0	1	copy fasta	FAM187A	chr17	44898433	44910390
FAM187B_chr19_35219800_35233739	1/0	c0001	1110	221	37	20	148	3	12	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	c0002	1110	76	5	23	32	3	13	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/1	c0003	1110	51	10	20	7	5	8	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	c0004	1110	33	1	5	25	0	2	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	c0005	1110	23	22	1	0	0	0	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	c0006	1110	20	4	6	1	3	6	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	c0007	1110	12	12	0	0	0	0	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	c0008	1110	3	3	0	0	0	0	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	c0009	1110	3	0	0	0	1	2	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	c0010	1110	3	0	2	0	0	1	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	c0011	1110	1	0	0	1	0	0	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	c0012	1110	1	1	0	0	0	0	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	c0013	1110	1	1	0	0	0	0	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	c0014	1110	1	0	0	0	1	0	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	c0015	1110	1	0	1	0	0	0	copy fasta	FAM187B	chr19	35219800	35233739
FAM193A_chr4_2531647_2737573	1/1	c0001	4548	242	35	51	113	11	30	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0002	4548	12	8	1	0	1	2	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0003	4548	12	12	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0004	4548	10	10	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0005	4548	9	2	2	2	0	3	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0006	4549	8	1	3	2	0	2	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0007	4548	8	8	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0008	4548	8	5	0	2	0	1	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0009	4548	4	0	0	4	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0010	4548	2	2	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0011	4549	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573