JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM193A_chr4_2531647_2737573	0/0	c0012	4549	1	0	0	1	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0013	4549	1	0	0	0	1	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0014	4549	1	0	0	1	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0015	4548	1	0	0	0	1	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0016	4548	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0017	4548	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0018	4548	1	0	1	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0019	4548	1	0	1	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0020	4548	1	0	0	1	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0021	4548	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0022	4548	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0023	4548	1	0	1	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0024	4548	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	c0025	4548	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193B_chr5_177514789_177559563	0/1	c0001	2469	343	70	66	161	12	33	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	1/0	c0002	2469	5	4	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0003	2469	4	4	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0004	2469	3	3	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0005	2469	2	0	0	0	0	2	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0006	2469	2	0	2	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0007	2469	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0008	2469	1	1	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0009	2469	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0010	2469	1	0	0	0	0	1	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0011	2469	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0012	2469	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0013	2469	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0014	2469	1	1	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0015	2469	1	1	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0016	2469	1	0	1	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	c0017	2469	1	0	1	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM199X_chrX_104161453_104200902	1/1	c0001	1167	284	71	45	123	13	30	copy fasta	FAM199X	chrX	104161453	104200902
FAM199X_chrX_104161453_104200902	0/0	c0002	1167	1	1	0	0	0	0	copy fasta	FAM199X	chrX	104161453	104200902
FAM200A_chr7_99541300_99557114	0/0	c0001	1722	191	82	17	67	6	19	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	1/1	c0002	1722	179	6	41	97	8	25	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	0/0	c0003	1722	5	0	0	5	0	0	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	0/0	c0004	1722	1	1	0	0	0	0	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	0/0	c0005	1722	1	1	0	0	0	0	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	0/0	c0006	1722	1	0	0	1	0	0	copy fasta	FAM200A	chr7	99541300	99557114
FAM200B_chr4_15676827_15695447	0/0	c0001	1974	161	30	21	89	3	18	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	c0002	1974	144	19	26	82	4	13	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	c0003	1974	84	30	18	22	3	11	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/1	c0004	1974	21	0	6	9	5	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	c0005	1974	5	5	0	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	1/0	c0006	1974	5	0	1	0	3	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	c0007	1971	3	3	0	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	c0008	1974	2	0	0	2	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	c0009	1974	2	2	0	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	c0010	1974	1	0	1	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	c0011	1974	1	0	1	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447