JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM200B_chr4_15676827_15695447	0/0	c0012	1974	1	1	0	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	c0013	1974	1	1	0	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	c0014	1974	1	1	0	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	c0015	1974	1	0	0	1	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	c0016	1974	1	0	0	1	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200C_chr5_160388148_160405054	1/1	c0001	1785	406	82	70	203	14	35	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	c0002	1785	13	1	7	0	2	3	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	c0003	1785	5	3	2	0	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	c0004	1785	4	3	1	0	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	c0005	1785	3	0	0	3	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	c0006	1785	1	0	0	0	0	1	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	c0007	1785	1	1	0	0	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	c0008	1785	1	0	0	1	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	c0009	1785	1	0	0	0	0	1	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	c0010	1785	1	0	0	1	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	c0011	1785	1	0	0	1	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	c0012	1785	1	1	0	0	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	c0013	1785	1	0	0	1	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	c0014	1785	1	1	0	0	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM204A_chr10_118292925_118347324	1/1	c0001	702	393	90	76	175	16	34	copy fasta	FAM204A	chr10	118292925	118347324
FAM204A_chr10_118292925_118347324	0/0	c0002	702	1	0	0	1	0	0	copy fasta	FAM204A	chr10	118292925	118347324
FAM209A_chr20_56519744_56531152	1/1	c0001	516	402	88	73	181	18	40	copy fasta	FAM209A	chr20	56519744	56531152
FAM209A_chr20_56519744_56531152	0/0	c0002	516	6	0	0	6	0	0	copy fasta	FAM209A	chr20	56519744	56531152
FAM209A_chr20_56519744_56531152	0/0	c0003	516	5	0	2	2	0	1	copy fasta	FAM209A	chr20	56519744	56531152
FAM209A_chr20_56519744_56531152	0/0	c0004	516	4	0	4	0	0	0	copy fasta	FAM209A	chr20	56519744	56531152
FAM209A_chr20_56519744_56531152	0/0	c0005	516	2	0	0	0	0	2	copy fasta	FAM209A	chr20	56519744	56531152
FAM209A_chr20_56519744_56531152	0/0	c0006	516	1	0	0	1	0	0	copy fasta	FAM209A	chr20	56519744	56531152
FAM209A_chr20_56519744_56531152	0/0	c0007	516	1	0	0	0	0	1	copy fasta	FAM209A	chr20	56519744	56531152
FAM209A_chr20_56519744_56531152	0/0	c0008	516	1	0	1	0	0	0	copy fasta	FAM209A	chr20	56519744	56531152
FAM209B_chr20_56528246_56541520	1/0	c0001	516	140	4	26	83	6	20	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	c0002	516	110	45	33	12	4	16	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	c0003	516	91	2	4	85	0	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/1	c0004	516	33	26	5	0	1	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	c0005	516	13	0	5	6	1	1	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	c0006	516	10	0	4	1	0	5	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	c0007	516	5	4	1	0	0	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	c0008	516	4	4	0	0	0	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	c0009	516	3	3	0	0	0	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	c0010	516	3	3	0	0	0	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	c0011	516	1	1	0	0	0	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	c0012	516	1	1	0	0	0	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	c0013	516	1	0	0	1	0	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	c0014	516	1	1	0	0	0	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM20A_chr17_68530116_68606367	0/0	c0001	1626	127	47	19	35	7	19	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0002	1626	55	7	12	28	4	4	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0003	1626	35	11	5	16	1	2	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0004	1626	33	3	1	24	1	4	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0005	1626	31	4	3	21	0	3	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	1/0	c0006	1626	31	3	13	4	3	7	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0007	1626	28	0	10	17	0	1	copy fasta	FAM20A	chr17	68530116	68606367