JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM20A_chr17_68530116_68606367	0/0	c0008	1626	8	0	0	6	0	2	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/1	c0009	1626	5	1	3	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0010	1626	4	0	1	3	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0011	1626	3	3	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0012	1626	3	0	0	3	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0013	1626	2	0	1	0	0	1	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0014	1626	2	0	0	2	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0015	1626	2	0	0	2	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0016	1626	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0017	1626	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0018	1626	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0019	1626	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0020	1626	1	0	0	1	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0021	1626	1	0	0	0	0	1	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0022	1626	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0023	1626	1	0	0	1	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0024	1626	1	0	0	1	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0025	1626	1	0	0	1	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	c0026	1626	1	0	0	1	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20B_chr1_179020894_179081567	1/1	c0001	1230	404	89	76	190	14	33	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	c0002	1230	2	0	2	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	c0003	1230	1	1	0	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	c0004	1230	1	0	0	0	0	1	copy fasta	FAM20B	chr1	179020894	179081567
FAM210A_chr18_13658347_13731558	1/1	c0001	819	312	79	66	108	16	41	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	c0002	819	7	2	0	3	0	2	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	c0003	819	4	4	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	c0004	819	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	c0005	836	1	0	0	1	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	c0006	819	1	0	0	0	0	1	copy fasta	FAM210A	chr18	13658347	13731558
FAM210B_chr20_56353974_56373663	1/0	c0001	579	305	50	42	169	9	34	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/1	c0002	579	43	15	14	0	3	10	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	c0003	579	38	34	3	0	0	1	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	c0004	579	1	0	0	1	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	c0005	579	1	0	0	1	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	c0006	579	1	0	0	1	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	c0007	579	1	1	0	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	c0008	579	1	0	1	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	c0009	579	1	0	0	0	0	1	copy fasta	FAM210B	chr20	56353974	56373663
FAM216A_chr12_110463845_110495385	1/1	c0001	822	263	75	56	82	15	33	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	c0002	822	35	13	0	18	0	4	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	c0003	822	5	0	4	0	1	0	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	c0004	822	1	1	0	0	0	0	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	c0005	822	1	0	0	1	0	0	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	c0006	822	1	1	0	0	0	0	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	c0007	822	1	0	0	0	0	1	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	c0008	822	1	0	0	1	0	0	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	c0009	822	1	1	0	0	0	0	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	c0010	822	1	1	0	0	0	0	copy fasta	FAM216A	chr12	110463845	110495385
FAM216B_chr13_42776584_42796549	1/1	c0001	420	446	83	78	218	18	47	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	c0002	420	5	3	2	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549