JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM216B_chr13_42776584_42796549	0/0	c0003	420	1	0	0	0	0	1	copy fasta	FAM216B	chr13	42776584	42796549
FAM217A_chr6_4063367_4084137	0/1	c0001	1527	227	13	49	116	13	35	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0002	1527	111	15	19	72	3	2	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	1/0	c0003	1527	37	28	5	0	0	3	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0004	1527	14	12	2	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0005	1527	12	4	6	0	2	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0006	1527	9	8	1	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0007	1527	6	6	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0008	1527	3	0	0	0	0	3	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0009	1527	3	3	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0010	1527	3	3	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0011	1527	2	2	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0012	1527	1	1	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0013	1527	1	0	0	1	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0014	1527	1	0	0	1	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0015	1527	1	1	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0016	1527	1	0	0	0	0	1	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0017	1527	1	1	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	c0018	1527	1	1	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217B_chr20_59935389_59953680	1/1	c0001	1152	352	77	66	150	16	41	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	c0002	1152	10	9	1	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	c0003	1152	6	0	0	6	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	c0004	1152	2	1	1	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	c0005	1152	1	0	0	1	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	c0006	1152	1	0	0	1	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	c0007	1152	1	0	0	1	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	c0008	1152	1	0	0	1	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	c0009	1152	1	1	0	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	c0010	1152	1	0	0	0	0	1	copy fasta	FAM217B	chr20	59935389	59953680
FAM219A_chr9_34393184_34463570	1/1	c0001	558	391	84	72	184	12	37	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	c0002	558	3	0	2	0	0	1	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	c0003	558	1	0	0	1	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219A_chr9_34393184_34463570	0/0	c0004	558	1	0	0	1	0	0	copy fasta	FAM219A	chr9	34393184	34463570
FAM219B_chr15_74894992_74911851	1/1	c0001	597	429	84	70	211	14	48	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	c0002	597	1	0	0	1	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	c0003	597	1	1	0	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	c0004	597	1	1	0	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM220A_chr7_6324411_6353967	0/1	c0001	780	135	18	24	77	3	12	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	c0002	780	106	35	14	51	0	6	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	1/0	c0003	780	84	10	25	22	11	15	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	c0004	780	42	1	9	25	1	6	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	c0005	780	40	27	0	7	3	3	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	c0006	780	4	4	0	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	c0007	780	2	0	2	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	c0008	780	1	0	0	0	0	1	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	c0009	780	1	0	0	1	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	c0010	780	1	0	0	1	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	c0011	780	1	0	0	1	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	c0012	780	1	1	0	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	c0013	780	1	0	0	0	0	1	copy fasta	FAM220A	chr7	6324411	6353967