JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM220A_chr7_6324411_6353967	0/0	c0014	756	1	0	0	1	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM221A_chr7_23675199_23707650	1/1	c0001	897	351	87	73	138	17	34	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	c0002	897	47	0	2	37	1	7	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	c0003	897	6	4	2	0	0	0	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	c0004	897	2	0	0	1	0	1	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	c0005	897	2	2	0	0	0	0	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	c0006	897	1	0	1	0	0	0	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	c0007	897	1	1	0	0	0	0	copy fasta	FAM221A	chr7	23675199	23707650
FAM221B_chr9_35811391_35833732	1/1	c0001	1209	283	62	47	130	10	32	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	c0002	1209	85	5	18	54	2	6	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	c0003	1209	29	9	2	16	0	2	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	c0004	1209	7	6	1	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	c0005	1209	6	5	1	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	c0006	1209	3	3	0	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	c0007	1209	2	0	0	0	0	2	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	c0008	1209	1	1	0	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	c0009	1209	1	1	0	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	c0010	1209	1	1	0	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	c0011	1209	1	0	0	1	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	c0012	1209	1	0	0	1	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	c0013	1209	1	0	1	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	c0014	1209	1	1	0	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM222A_chr12_109708825_109775495	1/1	c0001	1359	334	76	52	152	15	37	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	c0002	1359	7	6	1	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	c0003	1359	5	0	0	5	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	c0004	1359	5	5	0	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	c0005	1359	2	0	0	0	0	2	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	c0006	1359	2	2	0	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	c0007	1359	2	0	2	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	c0008	1359	2	0	0	2	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	c0009	1359	1	0	1	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	c0010	1359	1	0	0	1	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	c0011	1359	1	0	0	1	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	c0012	1359	1	0	0	0	1	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	c0013	1359	1	0	0	0	0	1	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	c0014	1359	1	0	0	1	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	c0015	1359	1	1	0	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222B_chr17_28750980_28847790	1/0	c0001	1689	182	57	40	56	4	24	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/1	c0002	1689	84	14	15	41	2	11	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	c0003	1689	2	1	1	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	c0004	1689	2	2	0	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	c0005	1689	1	0	0	1	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	c0006	1689	1	1	0	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	c0007	1689	1	0	1	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	c0008	1689	1	0	0	0	0	1	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	c0009	1689	1	1	0	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	c0010	1689	1	0	1	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM227A_chr22_38573118_38661392	1/1	c0001	1713	277	66	52	118	14	25	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	c0002	1713	42	8	0	33	0	1	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	c0003	1713	5	5	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392