JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM227A_chr22_38573118_38661392	0/0	c0004	1713	1	1	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	c0005	1713	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	c0006	1713	1	1	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	c0007	1713	1	1	0	0	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227B_chr15_49321970_49625818	1/1	c0001	1527	267	48	45	113	14	45	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	c0002	1527	15	14	1	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	c0003	1527	3	2	1	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	c0004	1527	2	0	0	0	0	2	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	c0005	1527	2	2	0	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	c0006	1527	2	0	1	0	0	1	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	c0007	1527	1	0	0	1	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	c0008	1527	1	0	0	1	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	c0009	1527	1	0	0	1	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM228A_chr2_24170053_24196698	1/0	c0001	621	272	79	53	102	13	24	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/1	c0002	621	67	15	9	29	3	10	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	c0003	621	3	0	0	3	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	c0004	621	1	1	0	0	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	c0005	621	1	0	0	1	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	c0006	621	1	1	0	0	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	c0007	621	1	0	0	1	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228B_chr2_24118469_24174638	0/0	c0001	975	141	21	36	67	4	13	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	c0002	975	47	12	8	18	1	8	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	1/0	c0003	975	33	27	3	1	1	0	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	c0004	974	19	2	3	10	3	1	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/1	c0005	975	16	8	0	5	1	1	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	c0006	975	15	4	2	6	0	3	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	c0007	975	9	0	4	1	1	3	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	c0008	975	3	3	0	0	0	0	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	c0009	975	2	0	1	0	0	1	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	c0010	975	1	0	0	1	0	0	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	c0011	975	1	1	0	0	0	0	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	c0012	975	1	0	1	0	0	0	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	c0013	974	1	0	0	1	0	0	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	c0014	975	1	0	0	0	1	0	copy fasta	FAM228B	chr2	24118469	24174638
FAM229A_chr1_32356270_32367485	1/1	c0001	384	273	78	47	102	12	32	copy fasta	FAM229A	chr1	32356270	32367485
FAM229A_chr1_32356270_32367485	0/0	c0002	384	17	16	1	0	0	0	copy fasta	FAM229A	chr1	32356270	32367485
FAM229A_chr1_32356270_32367485	0/0	c0003	384	3	1	2	0	0	0	copy fasta	FAM229A	chr1	32356270	32367485
FAM229A_chr1_32356270_32367485	0/0	c0004	384	2	0	2	0	0	0	copy fasta	FAM229A	chr1	32356270	32367485
FAM229A_chr1_32356270_32367485	0/0	c0005	384	1	1	0	0	0	0	copy fasta	FAM229A	chr1	32356270	32367485
FAM229B_chr6_112082591_112107790	1/1	c0001	243	405	86	69	193	13	42	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	c0002	243	5	5	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	c0003	243	3	0	0	3	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	c0004	243	3	3	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	c0005	243	2	0	1	0	1	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM234A_chr16_229821_271096	1/1	c0001	1659	262	67	52	100	11	30	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0002	1659	84	10	14	45	3	12	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0003	1659	14	0	1	13	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0004	1659	8	0	3	5	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0005	1659	6	6	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0006	1659	5	3	2	0	0	0	copy fasta	FAM234A	chr16	229821	271096