Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADRA1D_chr20_4215630_4254287	0/0	c0007	1719	1	0	1	0	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	c0008	1719	1	1	0	0	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	c0009	1719	1	0	1	0	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	c0010	1719	1	1	0	0	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	c0011	1719	1	1	0	0	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	c0012	1719	1	0	0	1	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	c0013	1719	1	0	0	1	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA2A_chr10_111072029_111085907	1/1	c0001	1398	328	67	65	150	9	35	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	c0002	1398	85	14	8	57	0	6	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	c0003	1398	6	6	0	0	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	c0004	1398	4	0	0	0	0	4	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	c0005	1398	1	0	0	1	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	c0006	1398	1	0	0	1	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	c0007	1398	1	0	0	0	0	1	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	c0008	1398	1	0	0	1	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	c0009	1398	1	0	1	0	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	c0010	1398	1	0	0	1	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	c0011	1398	1	0	0	1	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	c0012	1398	1	1	0	0	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	c0013	1398	1	0	0	0	1	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2B_chr2_96107876_96121571	0/0	c0001	1353	199	54	35	76	6	28	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	c0002	1344	121	8	35	65	2	11	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	c0003	1353	45	8	7	29	0	1	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	1/0	c0004	1353	17	16	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	c0005	1342	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/1	c0006	1353	1	0	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	c0007	1344	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	c0008	1353	1	1	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	c0009	1353	1	0	1	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	c0010	1353	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	c0011	1353	1	1	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	c0012	1353	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2C_chr4_3761385_3773526	1/1	c0001	1389	257	41	52	114	16	32	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0002	1389	78	17	10	39	2	10	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0003	1377	61	34	9	16	0	2	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0004	1389	9	0	8	1	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0005	1389	2	2	0	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0006	1377	2	0	0	2	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0007	1389	1	1	0	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0008	1389	1	0	1	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0009	1377	1	1	0	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0010	1377	1	0	0	1	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0011	1389	1	0	1	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0012	1389	1	0	1	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0013	1323	1	1	0	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0014	1377	1	1	0	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0015	1377	1	0	0	0	0	1	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0016	1389	1	0	0	0	0	1	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	c0017	1377	1	0	0	1	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRB1_chr10_114038866_114051904	0/1	c0001	1434	182	23	43	86	13	16	copy fasta	ADRB1	chr10	114038866	114051904