JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM234A_chr16_229821_271096	0/0	c0007	1659	3	3	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0008	1659	2	2	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0009	1659	2	0	0	2	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0010	1659	2	0	0	2	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0011	1659	2	0	2	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0012	1659	1	1	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0013	1659	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0014	1659	1	0	0	0	0	1	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0015	1659	1	1	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0016	1659	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0017	1659	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0018	1659	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0019	1659	1	0	1	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0020	1659	1	0	1	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0021	1659	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0022	1659	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0023	1659	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0024	1659	1	0	0	0	0	1	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0025	1659	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0026	1659	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0027	1659	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0028	1659	1	1	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	c0029	1659	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234B_chr12_13039381_13088449	0/1	c0001	1869	225	19	48	116	13	28	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	c0002	1869	130	24	17	73	2	14	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	c0003	1869	21	21	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	c0004	1869	16	14	2	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	c0005	1869	11	0	0	9	1	1	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	c0006	1869	8	6	1	1	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	1/0	c0007	1869	4	3	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	c0008	1869	1	1	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	c0009	1869	1	0	0	1	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	c0010	1869	1	0	0	1	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	c0011	1869	1	1	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	c0012	1869	1	0	0	1	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	c0013	1869	1	0	0	0	0	1	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	c0014	1869	1	1	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	c0015	1869	1	1	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	c0016	1869	1	1	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM236A_chrX_72933206_72943958	0/0	c0001	240	114	28	30	34	7	15	copy fasta	FAM236A	chrX	72933206	72943958
FAM236A_chrX_72933206_72943958	0/0	c0002	240	44	1	4	37	1	1	copy fasta	FAM236A	chrX	72933206	72943958
FAM236B_chrX_72776865_72787660	0/0	c0001	240	102	23	23	39	5	12	copy fasta	FAM236B	chrX	72776865	72787660
FAM236B_chrX_72776865_72787660	0/0	c0002	240	6	0	0	6	0	0	copy fasta	FAM236B	chrX	72776865	72787660
FAM236B_chrX_72776865_72787660	0/0	c0003	242	1	0	0	1	0	0	copy fasta	FAM236B	chrX	72776865	72787660
FAM236B_chrX_72776865_72787660	0/0	c0004	220	1	1	0	0	0	0	copy fasta	FAM236B	chrX	72776865	72787660
FAM236C_chrX_72907615_72918401	0/0	c0001	240	151	25	14	104	2	6	copy fasta	FAM236C	chrX	72907615	72918401
FAM236C_chrX_72907615_72918401	0/0	c0002	240	45	4	17	9	5	10	copy fasta	FAM236C	chrX	72907615	72918401
FAM236C_chrX_72907615_72918401	0/0	c0003	240	1	1	0	0	0	0	copy fasta	FAM236C	chrX	72907615	72918401
FAM236C_chrX_72907615_72918401	0/0	c0004	239	1	0	1	0	0	0	copy fasta	FAM236C	chrX	72907615	72918401
FAM236C_chrX_72907615_72918401	0/0	c0005	241	1	0	0	0	0	1	copy fasta	FAM236C	chrX	72907615	72918401