JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM236D_chrX_72802425_72813210	0/0	c0001	240	167	32	34	84	3	14	copy fasta	FAM236D	chrX	72802425	72813210
FAM236D_chrX_72802425_72813210	0/0	c0002	240	17	3	0	11	0	3	copy fasta	FAM236D	chrX	72802425	72813210
FAM236D_chrX_72802425_72813210	0/0	c0003	240	2	2	0	0	0	0	copy fasta	FAM236D	chrX	72802425	72813210
FAM237A_chr2_206637487_206654365	1/1	c0001	546	458	94	84	217	17	44	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	c0002	546	4	4	0	0	0	0	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	c0003	546	1	0	0	1	0	0	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	c0004	546	1	0	0	0	1	0	copy fasta	FAM237A	chr2	206637487	206654365
FAM237B_chr7_90311807_90326304	1/0	c0001	420	345	88	57	142	14	43	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/1	c0002	420	57	1	18	34	0	3	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	c0003	420	4	3	1	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	c0004	420	2	0	0	2	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM240A_chr3_46607525_46631543	0/1	c0001	252	392	69	74	192	14	42	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	1/0	c0002	252	23	21	1	0	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	c0003	252	17	7	0	10	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	c0004	252	2	1	0	1	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	c0005	252	2	0	2	0	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	c0006	252	1	0	0	1	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	c0007	252	1	0	1	0	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240B_chr9_38689266_38725133	1/1	c0001	237	463	92	80	223	18	48	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	c0002	237	1	1	0	0	0	0	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	c0003	237	1	0	0	1	0	0	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	c0004	237	1	1	0	0	0	0	copy fasta	FAM240B	chr9	38689266	38725133
FAM240C_chr2_241888988_241905464	0/0	c0001	288	19	6	6	1	4	2	copy fasta	FAM240C	chr2	241888988	241905464
FAM240C_chr2_241888988_241905464	0/1	c0002	288	18	6	4	3	2	2	copy fasta	FAM240C	chr2	241888988	241905464
FAM241A_chr4_112140454_112200256	0/1	c0001	399	384	95	60	176	14	38	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	c0002	399	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	c0003	399	1	1	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	1/0	c0004	399	1	0	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	c0005	399	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241B_chr10_69625247_69638596	0/0	c0001	366	287	29	46	181	11	20	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	1/1	c0002	366	114	38	24	24	5	21	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	0/0	c0003	366	54	27	11	5	2	9	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	0/0	c0004	366	3	0	0	3	0	0	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	0/0	c0005	366	2	2	0	0	0	0	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	0/0	c0006	366	1	0	1	0	0	0	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	0/0	c0007	366	1	0	0	1	0	0	copy fasta	FAM241B	chr10	69625247	69638596
FAM246A_chr22_21355601_21366299	1/1	c0001	699	243	60	62	73	11	35	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0002	702	122	6	17	88	2	9	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0003	702	8	8	0	0	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0004	702	7	4	0	3	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0005	699	6	6	0	0	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0006	699	5	0	0	5	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0007	699	4	4	0	0	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0008	699	4	4	0	0	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0009	699	3	0	2	0	1	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0010	699	2	2	0	0	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0011	710	2	0	0	2	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0012	699	1	0	0	0	0	1	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0013	699	1	1	0	0	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0014	699	1	1	0	0	0	0	copy fasta	FAM246A	chr22	21355601	21366299