JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM246A_chr22_21355601_21366299	0/0	c0015	699	1	0	1	0	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0016	699	1	0	0	1	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0017	714	1	0	0	0	0	1	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0018	702	1	0	0	1	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0019	699	1	0	0	1	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0020	699	1	0	0	1	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	c0021	702	1	0	0	1	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246B_chr22_18628984_18639682	1/0	c0001	699	28	9	5	11	0	2	copy fasta	FAM246B	chr22	18628984	18639682
FAM246B_chr22_18628984_18639682	0/0	c0002	699	2	2	0	0	0	0	copy fasta	FAM246B	chr22	18628984	18639682
FAM246B_chr22_18628984_18639682	0/0	c0003	699	1	1	0	0	0	0	copy fasta	FAM246B	chr22	18628984	18639682
FAM246B_chr22_18628984_18639682	0/0	c0004	699	1	0	0	1	0	0	copy fasta	FAM246B	chr22	18628984	18639682
FAM246B_chr22_18628984_18639682	0/0	c0005	699	1	0	1	0	0	0	copy fasta	FAM246B	chr22	18628984	18639682
FAM24A_chr10_122905610_122918111	1/1	c0001	318	421	87	72	196	16	48	copy fasta	FAM24A	chr10	122905610	122918111
FAM24A_chr10_122905610_122918111	0/0	c0002	318	4	1	3	0	0	0	copy fasta	FAM24A	chr10	122905610	122918111
FAM24A_chr10_122905610_122918111	0/0	c0003	318	1	0	1	0	0	0	copy fasta	FAM24A	chr10	122905610	122918111
FAM24B_chr10_122844078_122884581	0/0	c0001	285	194	39	37	85	8	25	copy fasta	FAM24B	chr10	122844078	122884581
FAM24B_chr10_122844078_122884581	1/1	c0002	285	168	44	36	63	4	19	copy fasta	FAM24B	chr10	122844078	122884581
FAM24B_chr10_122844078_122884581	0/0	c0003	285	2	1	1	0	0	0	copy fasta	FAM24B	chr10	122844078	122884581
FAM25A_chr10_87015294_87029730	0/0	c0001	270	234	46	31	125	7	25	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	1/0	c0002	270	115	16	32	42	8	16	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	0/1	c0003	270	41	8	11	15	0	6	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	0/0	c0004	270	17	0	2	15	0	0	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	0/0	c0005	270	16	12	2	0	0	2	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	0/0	c0006	270	8	3	3	0	1	1	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	0/0	c0007	270	7	7	0	0	0	0	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	0/0	c0008	270	3	3	0	0	0	0	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	0/0	c0009	270	2	1	1	0	0	0	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	0/0	c0010	270	1	0	0	1	0	0	copy fasta	FAM25A	chr10	87015294	87029730
FAM25C_chr10_47990322_48004791	0/0	c0001	270	426	81	72	213	18	42	copy fasta	FAM25C	chr10	47990322	48004791
FAM25C_chr10_47990322_48004791	0/0	c0002	270	4	4	0	0	0	0	copy fasta	FAM25C	chr10	47990322	48004791
FAM25C_chr10_47990322_48004791	0/0	c0003	270	2	2	0	0	0	0	copy fasta	FAM25C	chr10	47990322	48004791
FAM25C_chr10_47990322_48004791	0/0	c0004	270	2	2	0	0	0	0	copy fasta	FAM25C	chr10	47990322	48004791
FAM25C_chr10_47990322_48004791	0/0	c0005	270	1	1	0	0	0	0	copy fasta	FAM25C	chr10	47990322	48004791
FAM25C_chr10_47990322_48004791	0/0	c0006	270	1	0	0	1	0	0	copy fasta	FAM25C	chr10	47990322	48004791
FAM25G_chr10_47482219_47496700	0/0	c0001	270	418	80	70	208	18	42	copy fasta	FAM25G	chr10	47482219	47496700
FAM25G_chr10_47482219_47496700	0/0	c0002	270	3	3	0	0	0	0	copy fasta	FAM25G	chr10	47482219	47496700
FAM25G_chr10_47482219_47496700	0/0	c0003	270	2	2	0	0	0	0	copy fasta	FAM25G	chr10	47482219	47496700
FAM25G_chr10_47482219_47496700	0/0	c0004	270	1	1	0	0	0	0	copy fasta	FAM25G	chr10	47482219	47496700
FAM32A_chr19_16180410_16197046	1/1	c0001	339	411	96	72	182	18	41	copy fasta	FAM32A	chr19	16180410	16197046
FAM32A_chr19_16180410_16197046	0/0	c0002	339	1	0	0	0	0	1	copy fasta	FAM32A	chr19	16180410	16197046
FAM3A_chrX_154501171_154521232	1/1	c0001	693	333	79	62	144	12	34	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	c0002	693	1	0	0	0	1	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	c0003	693	1	1	0	0	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	c0004	693	1	0	0	1	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	c0005	693	1	0	0	1	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	c0006	693	1	0	0	1	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	c0007	693	1	0	0	1	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3B_chr21_41311801_41362727	0/0	c0001	708	220	61	44	74	11	30	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	1/1	c0002	708	41	0	15	18	2	4	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	c0003	708	27	21	4	1	0	1	copy fasta	FAM3B	chr21	41311801	41362727