JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FAM3B_chr21_41311801_41362727	0/0	c0004	708	18	5	1	11	1	0	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	c0005	708	4	3	1	0	0	0	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	c0006	708	2	0	0	2	0	0	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	c0007	708	1	0	0	0	0	1	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	c0008	487	1	0	1	0	0	0	copy fasta	FAM3B	chr21	41311801	41362727
FAM3C_chr7_121343878_121401308	1/1	c0001	684	270	82	64	82	14	26	copy fasta	FAM3C	chr7	121343878	121401308
FAM3D_chr3_58628946_58671774	1/1	c0001	675	350	81	61	158	9	39	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	c0002	675	28	8	11	1	4	4	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	c0003	675	5	1	1	0	0	3	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	c0004	675	4	0	0	0	0	4	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	c0005	675	3	0	0	3	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	c0006	675	2	2	0	0	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	c0007	675	2	0	0	2	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	c0008	675	1	0	0	0	1	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	c0009	675	1	1	0	0	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	c0010	675	1	1	0	0	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	c0011	675	1	0	1	0	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM43A_chr3_194680883_194694037	0/1	c0001	1272	244	38	44	132	6	23	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	1/0	c0002	1272	106	14	27	49	3	12	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	c0003	1272	41	28	5	1	1	6	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	c0004	1272	31	3	9	11	0	8	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	c0005	1287	4	4	0	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	c0006	1272	4	4	0	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	c0007	1272	3	0	0	3	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	c0008	1272	2	2	0	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	c0009	1272	1	1	0	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	c0010	1272	1	0	0	1	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	c0011	1272	1	0	0	1	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	c0012	1272	1	0	0	1	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	c0013	1272	1	0	0	1	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	c0014	1272	1	0	1	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	c0015	1272	1	0	0	0	0	1	copy fasta	FAM43A	chr3	194680883	194694037
FAM43B_chr1_20547573_20560020	1/1	c0001	990	448	91	80	208	18	49	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	c0002	990	5	3	2	0	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	c0003	990	4	0	0	4	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	c0004	990	1	0	0	0	0	1	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	c0005	990	1	0	0	1	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	c0006	990	1	0	0	1	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	c0007	990	1	0	0	1	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	c0008	990	1	1	0	0	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	c0009	990	1	1	0	0	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	c0010	990	1	0	0	1	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM47A_chrX_34124752_34137314	1/1	c0001	2376	188	45	26	87	6	22	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0002	2376	77	14	12	43	5	3	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0003	2337	27	6	16	1	2	2	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0004	2376	5	5	0	0	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0005	2376	5	0	0	5	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0006	2376	4	0	0	4	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0007	2376	3	3	0	0	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	c0008	2376	2	0	0	2	0	0	copy fasta	FAM47A	chrX	34124752	34137314